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This page was generated on 2025-04-01 15:41 -0400 (Tue, 01 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4764
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 88/431HostnameOS / ArchINSTALLBUILDCHECK
CytoMethIC 1.2.0  (landing page)
Jacob Fanale
Snapshot Date: 2025-04-01 07:30 -0400 (Tue, 01 Apr 2025)
git_url: https://git.bioconductor.org/packages/CytoMethIC
git_branch: RELEASE_3_20
git_last_commit: 0ab3d8b
git_last_commit_date: 2024-10-29 09:55:37 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CytoMethIC on nebbiolo2

To the developers/maintainers of the CytoMethIC package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CytoMethIC
Version: 1.2.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC
StartedAt: 2025-04-01 11:11:49 -0400 (Tue, 01 Apr 2025)
EndedAt: 2025-04-01 11:13:07 -0400 (Tue, 01 Apr 2025)
EllapsedTime: 77.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC
###
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* checking for file ‘CytoMethIC/DESCRIPTION’ ... OK
* preparing ‘CytoMethIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CytoMethIC.Rmd’ using knitr

Quitting from CytoMethIC.Rmd:106-111 [cyto8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `readRDS()`:
! cannot open the connection to 'https://github.com/zhou-lab/CytoMethIC_models/raw/main/models/Race3_rfcTCGA_InfHum3.rds'
---
Backtrace:
    ▆
 1. └─base::readRDS(url(sprintf("%s/Race3_rfcTCGA_InfHum3.rds", base_url)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CytoMethIC.Rmd' failed with diagnostics:
cannot open the connection to 'https://github.com/zhou-lab/CytoMethIC_models/raw/main/models/Race3_rfcTCGA_InfHum3.rds'
--- failed re-building ‘CytoMethIC.Rmd’

SUMMARY: processing the following file failed:
  ‘CytoMethIC.Rmd’

Error: Vignette re-building failed.
Execution halted