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This page was generated on 2025-03-03 11:42 -0500 (Mon, 03 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4708
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4495
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4506
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4460
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4363
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 780/2302HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDNAx 1.5.1  (landing page)
Robert Castelo
Snapshot Date: 2025-03-02 13:40 -0500 (Sun, 02 Mar 2025)
git_url: https://git.bioconductor.org/packages/gDNAx
git_branch: devel
git_last_commit: b30947b
git_last_commit_date: 2025-01-31 17:01:42 -0500 (Fri, 31 Jan 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    TIMEOUT  skipped


BUILD results for gDNAx on palomino7

To the developers/maintainers of the gDNAx package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDNAx.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gDNAx
Version: 1.5.1
Command: chmod a+r gDNAx -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gDNAx
StartedAt: 2025-03-02 18:50:12 -0500 (Sun, 02 Mar 2025)
EndedAt: 2025-03-02 18:52:22 -0500 (Sun, 02 Mar 2025)
EllapsedTime: 129.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r gDNAx -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gDNAx
###
##############################################################################
##############################################################################


* checking for file 'gDNAx/DESCRIPTION' ... OK
* preparing 'gDNAx':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'gDNAx.Rmd' using rmarkdown
[E::hts_idx_load3] Could not load local index file 'E:\biocbuild\bbs-3.21-bioc\tmpdir\RtmpyIf15U/s32gDNA0.bai' : Invalid argument
[E::hts_idx_load3] Could not load local index file 'E:\biocbuild\bbs-3.21-bioc\tmpdir\RtmpyIf15U/s32gDNA0' : No such file or directory

Quitting from lines 101-106 [unnamed-chunk-3] (gDNAx.Rmd)
Error: processing vignette 'gDNAx.Rmd' failed with diagnostics:
error in evaluating the argument 'obj' in selecting a method for function 'unname': isOpen(<BamFile>) is not 'TRUE'
--- failed re-building 'gDNAx.Rmd'

SUMMARY: processing the following file failed:
  'gDNAx.Rmd'

Error: Vignette re-building failed.
Execution halted