Back to Build/check report for BioC 3.21 experimental data
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-07-15 15:01 -0400 (Tue, 15 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4820
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 120/432HostnameOS / ArchINSTALLBUILDCHECK
ewceData 1.16.0  (landing page)
Alan Murphy
Snapshot Date: 2025-07-15 07:30 -0400 (Tue, 15 Jul 2025)
git_url: https://git.bioconductor.org/packages/ewceData
git_branch: RELEASE_3_21
git_last_commit: 794692e
git_last_commit_date: 2025-04-15 10:16:26 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for ewceData on nebbiolo1

To the developers/maintainers of the ewceData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ewceData
Version: 1.16.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings ewceData_1.16.0.tar.gz
StartedAt: 2025-07-15 12:15:08 -0400 (Tue, 15 Jul 2025)
EndedAt: 2025-07-15 12:17:42 -0400 (Tue, 15 Jul 2025)
EllapsedTime: 153.3 seconds
RetCode: 0
Status:   OK  
CheckDir: ewceData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings ewceData_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/ewceData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ewceData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL ewceData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘ewceData’ ...
** this is package ‘ewceData’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ewceData)

Tests output


Example timings

ewceData.Rcheck/ewceData-Ex.timings

nameusersystemelapsed
all_hgnc1.9190.1662.332
all_hgnc_wtEnsembl0.8930.1551.105
all_mgi0.7660.1070.937
all_mgi_wtEnsembl0.7920.0710.921
alzh_gwas_top1000.0000.0000.001
cortex_mrna2.4230.4212.905
ctd3.2910.1963.550
ensembl_transcript_lengths_GCcontent0.9910.1251.175
ewceData-Package0.7330.1310.922
example_genelist1.0160.2511.323
hpsd_genes0.6700.0860.819
hypothalamus_mrna0.9650.1221.143
id_genes0.6900.0850.838
mgi_synonym_data1.1350.0981.292
mouse_to_human_homologs0.7250.0590.844
rbfox_genes0.7030.0810.844
schiz_genes0.7420.0960.906
tt_alzh1.0560.7201.864
tt_alzh_BA360.6960.1030.860
tt_alzh_BA440.7310.0700.865