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This page was generated on 2025-11-19 06:45 -0500 (Wed, 19 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4858
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/49HostnameOS / ArchINSTALLBUILDCHECK
AlphaMissense.v2023.hg19 3.18.2  (landing page)
Robert Castelo
Snapshot Date: 2025-11-19 05:45 -0500 (Wed, 19 Nov 2025)
git_url: https://git.bioconductor.org/packages/AlphaMissense.v2023.hg19
git_branch: RELEASE_3_22
git_last_commit: f8b2919
git_last_commit_date: 2023-10-24 00:07:13 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for AlphaMissense.v2023.hg19 on nebbiolo2

To the developers/maintainers of the AlphaMissense.v2023.hg19 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AlphaMissense.v2023.hg19
Version: 3.18.2
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlphaMissense.v2023.hg19
StartedAt: 2025-11-19 05:56:27 -0500 (Wed, 19 Nov 2025)
EndedAt: 2025-11-19 05:57:44 -0500 (Wed, 19 Nov 2025)
EllapsedTime: 76.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlphaMissense.v2023.hg19
###
##############################################################################
##############################################################################


* checking for file ‘AlphaMissense.v2023.hg19/DESCRIPTION’ ... OK
* preparing ‘AlphaMissense.v2023.hg19’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AlphaMissense.v2023.hg19.Rmd’ using rmarkdown

Quitting from AlphaMissense.v2023.hg19.Rmd:78-82 [retrieve3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 25 resources failed to download
---
Backtrace:
     ▆
  1. └─GenomicScores::getGScores("AlphaMissense.v2023.hg19", accept.license = TRUE)
  2.   ├─AnnotationHub::cache(ah[ahids])
  3.   └─AnnotationHub::cache(ah[ahids])
  4.     └─AnnotationHub (local) .local(x, ...)
  5.       ├─methods::callNextMethod(...)
  6.       │ └─base::eval(call, callEnv)
  7.       │   └─base::eval(call, callEnv)
  8.       └─AnnotationHub (local) .nextMethod(...)
  9.         └─AnnotationHub (local) .local(x, ...)
 10.           └─AnnotationHub:::.cache_internal(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'AlphaMissense.v2023.hg19.Rmd' failed with diagnostics:
25 resources failed to download
--- failed re-building ‘AlphaMissense.v2023.hg19.Rmd’

SUMMARY: processing the following file failed:
  ‘AlphaMissense.v2023.hg19.Rmd’

Error: Vignette re-building failed.
Execution halted