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This page was generated on 2025-11-19 06:45 -0500 (Wed, 19 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4858
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 17/49HostnameOS / ArchINSTALLBUILDCHECK
CTCF 0.99.12  (landing page)
Mikhail Dozmorov
Snapshot Date: 2025-11-19 05:45 -0500 (Wed, 19 Nov 2025)
git_url: https://git.bioconductor.org/packages/CTCF
git_branch: RELEASE_3_22
git_last_commit: d9e3b8a
git_last_commit_date: 2025-07-29 13:29:06 -0500 (Tue, 29 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CTCF on nebbiolo2

To the developers/maintainers of the CTCF package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CTCF
Version: 0.99.12
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CTCF
StartedAt: 2025-11-19 05:56:29 -0500 (Wed, 19 Nov 2025)
EndedAt: 2025-11-19 05:57:10 -0500 (Wed, 19 Nov 2025)
EllapsedTime: 41.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CTCF
###
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* checking for file ‘CTCF/DESCRIPTION’ ... OK
* preparing ‘CTCF’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CTCF.Rmd’ using rmarkdown

Quitting from CTCF.Rmd:184-193 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'filter' is not an exported object from 'namespace:plyranges'
---
Backtrace:
    ▆
 1. └─CTCF_hg38 %>% plyranges::filter(pvalue < 1e-06)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CTCF.Rmd' failed with diagnostics:
'filter' is not an exported object from 'namespace:plyranges'
--- failed re-building ‘CTCF.Rmd’

SUMMARY: processing the following file failed:
  ‘CTCF.Rmd’

Error: Vignette re-building failed.
Execution halted