Alex Chit Hei Wong
| Snapshot Date: 2026-03-10 13:40 -0400 (Tue, 10 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/ompBAM |
| git_branch: devel |
| git_last_commit: 1bbdce2 |
| git_last_commit_date: 2025-10-29 11:16:35 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-11 11:33 -0400 (Wed, 11 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4719 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1509/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ompBAM 1.15.0 (landing page) Alex Chit Hei Wong
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for ompBAM in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ompBAM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ompBAM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ompBAM |
| Version: 1.15.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ompBAM |
| StartedAt: 2026-03-10 15:34:02 -0400 (Tue, 10 Mar 2026) |
| EndedAt: 2026-03-10 15:34:05 -0400 (Tue, 10 Mar 2026) |
| EllapsedTime: 3.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ompBAM
###
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* checking for file ‘ompBAM/DESCRIPTION’ ... OK
* preparing ‘ompBAM’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ompBAM-API-Docs.Rmd’ using rmarkdown
Quitting from ompBAM-API-Docs.Rmd:74-76 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
---
Backtrace:
▆
1. └─devtools::document(pkg_path)
2. └─roxygen2::roxygenise(pkg$path, roclets)
3. └─roxygen2 (local) load_code(base_path)
4. └─pkgload::load_all(path, helpers = FALSE, attach_testthat = FALSE)
5. └─pkgbuild::compile_dll(path, quiet = quiet, debug = debug)
6. └─pkgbuild::check_build_tools(quiet = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ompBAM-API-Docs.Rmd' failed with diagnostics:
Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
--- failed re-building ‘ompBAM-API-Docs.Rmd’
SUMMARY: processing the following file failed:
‘ompBAM-API-Docs.Rmd’
Error: Vignette re-building failed.
Execution halted