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This page was generated on 2015-10-27 12:12:54 -0400 (Tue, 27 Oct 2015).
| Package 217/1104 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ComplexHeatmap 1.7.1 Zuguang Gu
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] |  | |||||
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 1.7.1 |
| Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.7.1.tar.gz |
| StartedAt: 2015-10-27 02:53:16 -0400 (Tue, 27 Oct 2015) |
| EndedAt: 2015-10-27 02:54:25 -0400 (Tue, 27 Oct 2015) |
| EllapsedTime: 69.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.7.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/ComplexHeatmap.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘1.7.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [33s/33s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 10.609 0.039 10.658
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’ [1s/1s]
[1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ComplexHeatmap.Rcheck/00install.out:
* installing *source* package ‘ComplexHeatmap’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/ComplexHeatmap-Ex.timings:
| name | user | system | elapsed | |
| AdditiveUnit-class | 0 | 0 | 0 | |
| AdditiveUnit | 0 | 0 | 0 | |
| ColorMapping-class | 0.001 | 0.000 | 0.000 | |
| ColorMapping | 0.027 | 0.000 | 0.027 | |
| ComplexHeatmap-package | 0.001 | 0.000 | 0.001 | |
| Heatmap-class | 0.000 | 0.000 | 0.001 | |
| Heatmap | 10.609 | 0.039 | 10.658 | |
| HeatmapAnnotation-class | 0.001 | 0.000 | 0.001 | |
| HeatmapAnnotation | 0.071 | 0.000 | 0.071 | |
| HeatmapList-class | 3.265 | 0.000 | 3.265 | |
| HeatmapList | 0.000 | 0.000 | 0.001 | |
| SingleAnnotation-class | 0 | 0 | 0 | |
| SingleAnnotation | 0.08 | 0.00 | 0.08 | |
| add.AdditiveUnit | 3.721 | 0.000 | 3.721 | |
| add_heatmap-Heatmap-method | 0.918 | 0.000 | 0.917 | |
| add_heatmap-HeatmapAnnotation-method | 0.397 | 0.000 | 0.397 | |
| add_heatmap-HeatmapList-method | 1.828 | 0.000 | 1.828 | |
| add_heatmap-dispatch | 0.001 | 0.000 | 0.000 | |
| anno_barplot | 0.013 | 0.000 | 0.013 | |
| anno_boxplot | 0.038 | 0.000 | 0.039 | |
| anno_density | 0.198 | 0.000 | 0.199 | |
| anno_histogram | 0.037 | 0.000 | 0.037 | |
| anno_points | 0.004 | 0.000 | 0.003 | |
| anno_text | 0.221 | 0.000 | 0.221 | |
| annotation_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| color_mapping_legend-ColorMapping-method | 0.14 | 0.00 | 0.14 | |
| columnAnnotation | 0.008 | 0.000 | 0.007 | |
| column_anno_barplot | 0 | 0 | 0 | |
| column_anno_boxplot | 0.000 | 0.000 | 0.001 | |
| column_anno_density | 0.000 | 0.000 | 0.001 | |
| column_anno_histogram | 0.000 | 0.000 | 0.001 | |
| column_anno_points | 0.000 | 0.000 | 0.001 | |
| column_anno_text | 0.000 | 0.000 | 0.001 | |
| column_dend-Heatmap-method | 0.001 | 0.000 | 0.001 | |
| column_dend-HeatmapList-method | 0.001 | 0.000 | 0.001 | |
| column_dend-dispatch | 0.001 | 0.000 | 0.000 | |
| column_order-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| column_order-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| column_order-dispatch | 0.001 | 0.000 | 0.000 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0 | 0 | 0 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0 | 0 | 0 | |
| component_width-HeatmapList-method | 0 | 0 | 0 | |
| component_width-dispatch | 0 | 0 | 0 | |
| decorate_annotation | 0.466 | 0.000 | 0.467 | |
| decorate_column_dend | 0.001 | 0.000 | 0.001 | |
| decorate_column_names | 0.001 | 0.000 | 0.000 | |
| decorate_column_title | 0.001 | 0.000 | 0.000 | |
| decorate_dend | 0.238 | 0.000 | 0.238 | |
| decorate_dimnames | 0.263 | 0.000 | 0.262 | |
| decorate_heatmap_body | 0.234 | 0.000 | 0.235 | |
| decorate_row_dend | 0.001 | 0.000 | 0.000 | |
| decorate_row_names | 0.001 | 0.000 | 0.000 | |
| decorate_row_title | 0.001 | 0.000 | 0.000 | |
| decorate_title | 0.241 | 0.000 | 0.241 | |
| densityHeatmap | 3.348 | 0.000 | 3.352 | |
| dist2 | 0.003 | 0.000 | 0.002 | |
| draw-Heatmap-method | 0.305 | 0.000 | 0.306 | |
| draw-HeatmapAnnotation-method | 0.134 | 0.000 | 0.134 | |
| draw-HeatmapList-method | 1.193 | 0.000 | 1.194 | |
| draw-SingleAnnotation-method | 0.081 | 0.000 | 0.082 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_annotation_legend-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_dend-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| draw_dimnames-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| draw_heatmap_body-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| draw_heatmap_legend-HeatmapList-method | 0 | 0 | 0 | |
| draw_heatmap_list-HeatmapList-method | 0 | 0 | 0 | |
| draw_title-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_title-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_title-dispatch | 0.000 | 0.000 | 0.001 | |
| enhanced_basicplot | 0.865 | 0.003 | 0.868 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0.000 | 0.000 | 0.001 | |
| get_color_mapping_param_list-HeatmapAnnotation-method | 0.000 | 0.000 | 0.001 | |
| grid.dendrogram | 0.013 | 0.000 | 0.013 | |
| heatmap_legend_size-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| ht_global_opt | 0.000 | 0.000 | 0.001 | |
| is_abs_unit | 0.001 | 0.000 | 0.001 | |
| make_column_cluster-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| make_layout-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| make_layout-HeatmapList-method | 0.001 | 0.000 | 0.000 | |
| make_layout-dispatch | 0 | 0 | 0 | |
| make_row_cluster-Heatmap-method | 0 | 0 | 0 | |
| map_to_colors-ColorMapping-method | 0.016 | 0.000 | 0.018 | |
| max_text_height | 0.007 | 0.000 | 0.007 | |
| max_text_width | 0.011 | 0.000 | 0.011 | |
| oncoPrint | 0.000 | 0.000 | 0.001 | |
| plotDataFrame | 2.410 | 0.000 | 2.418 | |
| prepare-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| rowAnnotation | 0.009 | 0.000 | 0.008 | |
| row_anno_barplot | 0.001 | 0.000 | 0.001 | |
| row_anno_boxplot | 0.001 | 0.000 | 0.001 | |
| row_anno_density | 0.001 | 0.000 | 0.000 | |
| row_anno_histogram | 0.001 | 0.000 | 0.000 | |
| row_anno_points | 0.001 | 0.000 | 0.000 | |
| row_anno_text | 0 | 0 | 0 | |
| row_dend-Heatmap-method | 0 | 0 | 0 | |
| row_dend-HeatmapList-method | 0 | 0 | 0 | |
| row_dend-dispatch | 0 | 0 | 0 | |
| row_order-Heatmap-method | 0 | 0 | 0 | |
| row_order-HeatmapList-method | 0 | 0 | 0 | |
| row_order-dispatch | 0 | 0 | 0 | |
| selectArea | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0 | 0 | 0 | |
| show-ColorMapping-method | 0 | 0 | 0 | |
| show-Heatmap-method | 0.583 | 0.000 | 0.584 | |
| show-HeatmapAnnotation-method | 0 | 0 | 0 | |
| show-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| show-SingleAnnotation-method | 0.000 | 0.000 | 0.001 | |
| show-dispatch | 0.000 | 0.000 | 0.001 | |
| unify_mat_list | 0.000 | 0.000 | 0.001 | |