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BioC 3.3: CHECK report for RTN on windows2.bioconductor.org

This page was generated on 2015-10-20 14:18:02 -0400 (Tue, 20 Oct 2015).

Package 925/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.9.0
Mauro Castro
Snapshot Date: 2015-10-19 20:20:06 -0400 (Mon, 19 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RTN
Last Changed Rev: 109592 / Revision: 109765
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTN
Version: 1.9.0
Command: rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.9.0.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.9.0.tar.gz
StartedAt: 2015-10-20 05:42:56 -0400 (Tue, 20 Oct 2015)
EndedAt: 2015-10-20 05:45:50 -0400 (Tue, 20 Oct 2015)
EllapsedTime: 173.2 seconds
RetCode: 0
Status:  OK  
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.9.0.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/RTN.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTN' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [13s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [4s]
 [4s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [5s]
 [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTN.Rcheck/00install.out:


install for i386

* installing *source* package 'RTN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTN' as RTN_1.9.0.zip
* DONE (RTN)

RTN.Rcheck/examples_i386/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data0.430.000.42
TNA-class000
TNI-class0.390.010.41
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess000
avs.vse000
tna.get0.410.000.40
tna.graph0.550.000.54
tna.gsea10.390.000.39
tna.gsea20.440.000.44
tna.mra0.410.000.41
tna.overlap0.390.000.39
tna.plot.gsea10.390.000.39
tna.plot.gsea20.400.000.41
tna.shadow0.390.020.40
tna.synergy0.430.000.42
tni.bootstrap0.540.020.57
tni.conditional0.580.000.57
tni.dpi.filter0.410.000.41
tni.get0.400.010.42
tni.graph0.410.000.41
tni.permutation0.380.020.40
tni.preprocess0.980.061.04
tni2tna.preprocess0.470.010.49

RTN.Rcheck/examples_x64/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data0.390.000.39
TNA-class000
TNI-class0.310.030.34
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess000
avs.vse000
tna.get0.390.000.39
tna.graph0.410.000.41
tna.gsea10.370.000.37
tna.gsea20.390.010.41
tna.mra0.390.000.39
tna.overlap0.350.020.36
tna.plot.gsea10.390.000.39
tna.plot.gsea20.360.000.36
tna.shadow0.480.000.48
tna.synergy0.500.030.53
tni.bootstrap0.360.000.36
tni.conditional0.390.010.41
tni.dpi.filter0.360.000.36
tni.get0.340.020.36
tni.graph0.390.000.39
tni.permutation0.610.030.64
tni.preprocess0.750.000.75
tni2tna.preprocess0.50.00.5