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BioC 3.3: BUILD report for VegaMC on linux2.bioconductor.org

This page was generated on 2015-10-27 12:12:06 -0400 (Tue, 27 Oct 2015).

Package 1087/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VegaMC 3.9.0
Sandro Morganella
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VegaMC
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: VegaMC
Version: 3.9.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VegaMC
StartedAt: 2015-10-26 23:05:18 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 23:05:24 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 6.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VegaMC
###
##############################################################################
##############################################################################


* checking for file ‘VegaMC/DESCRIPTION’ ... OK
* preparing ‘VegaMC’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘VegaMC’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c run_vegaMC.c -o run_vegaMC.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c sort_data.c -o sort_data.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c vegaMC.c -o vegaMC.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o VegaMC.so run_vegaMC.o sort_data.o vegaMC.o -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /tmp/RtmpQU7j92/Rinst6d3e79263ec1/VegaMC/libs
** R
** inst
** preparing package for lazy loading
Error : class "GIntervalTree" is not exported by 'namespace:GenomicRanges'
Error : package ‘genoset’ could not be loaded
ERROR: lazy loading failed for package ‘VegaMC’
* removing ‘/tmp/RtmpQU7j92/Rinst6d3e79263ec1/VegaMC’
      -----------------------------------
ERROR: package installation failed