BioC 3.3: BUILD report for ensemblVEP on morelia

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ensemblVEP
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* checking for file ‘ensemblVEP/DESCRIPTION’ ... OK
* preparing ‘ensemblVEP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Loading required package: GenomicRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: VariantAnnotation
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rsamtools
Loading required package: XVector
Loading required package: Biostrings

Attaching package: ‘VariantAnnotation’

The following object is masked from ‘package:base’:

    tabulate


Attaching package: ‘ensemblVEP’

The following object is masked from ‘package:Biobase’:

    cache


-------------------- WARNING ----------------------
MSG: homo_sapiens is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1198
CALLED BY: Bio/EnsEMBL/Registry.pm  LINE: 983
Date (localtime)    = Thu Oct 22 00:09:09 2015
Ensembl API version = 80
---------------------------------------------------

-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'homo_sapiens'
STACK Bio::EnsEMBL::Registry::get_adaptor /usr/local/variant_effect_predictor/Bio/EnsEMBL/Registry.pm:985
STACK main::connect_to_dbs /usr/local/variant_effect_predictor/variant_effect_predictor.pl:1205
STACK main::configure /usr/local/variant_effect_predictor/variant_effect_predictor.pl:794
STACK toplevel /usr/local/variant_effect_predictor/variant_effect_predictor.pl:142
Date (localtime)    = Thu Oct 22 00:09:09 2015
Ensembl API version = 80
---------------------------------------------------

Error: processing vignette 'ensemblVEP.Rnw' failed with diagnostics:
 chunk 4 (label = rtn_GRanges) 
Error in .io_check_exists(path(con)) : file(s) do not exist:
  '/tmp/RtmpQJbB1w/file11e6f7e7e94f'
Execution halted
BioC 3.3: BUILD report for ensemblVEP on morelia

Summary

Command output
