inSilicoDb 2.7.0
InSilico DB
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/inSilicoDb | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf inSilicoDb.buildbin-libdir inSilicoDb.Rcheck && mkdir inSilicoDb.buildbin-libdir inSilicoDb.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=inSilicoDb.buildbin-libdir inSilicoDb_2.7.0.tar.gz >inSilicoDb.Rcheck\00install.out 2>&1 && cp inSilicoDb.Rcheck\00install.out inSilicoDb-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=inSilicoDb.buildbin-libdir --install="check:inSilicoDb-install.out" --force-multiarch --no-vignettes --timings inSilicoDb_2.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/inSilicoDb.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'inSilicoDb/DESCRIPTION' ... OK
* this is package 'inSilicoDb' version '2.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'inSilicoDb' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'Biobase' 'RCurl' 'rjson'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkBinary: no visible global function definition for 'fromJSON'
getInSilicoBinary: no visible global function definition for
'basicHeaderGatherer'
getInSilicoBinary: no visible global function definition for
'getCurlHandle'
getInSilicoBinary: no visible global function definition for
'getBinaryURL'
getInSilicoJSON: no visible global function definition for
'basicHeaderGatherer'
getInSilicoJSON: no visible global function definition for
'getCurlHandle'
getInSilicoJSON: no visible global function definition for 'postForm'
getInSilicoJSON: no visible global function definition for 'fromJSON'
writeInSilicoCache: no visible binding for global variable 'cache'
Undefined global functions or variables:
basicHeaderGatherer cache fromJSON getBinaryURL getCurlHandle
postForm
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
getDatasets 2.07 0.23 14.57
getDataset 0.42 0.00 9.49
getDatasetPlatformList 0.32 0.00 8.61
getDatasetList 0.30 0.00 8.02
** running examples for arch 'x64' ... [52s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
getDatasets 2.08 0.20 14.75
getDataset 0.56 0.02 9.78
getDatasetPlatformList 0.40 0.00 8.66
getDatasetList 0.39 0.00 7.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'c:/biocbld/bbs-3.3-bioc/meat/inSilicoDb.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'inSilicoDb' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'inSilicoDb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'inSilicoDb' as inSilicoDb_2.7.0.zip
* DONE (inSilicoDb)