BioC 3.3: CHECK report for sangerseqR on windows2.bioconductor.org

Package: sangerseqR

Version: 1.7.0

Command: rm -rf sangerseqR.buildbin-libdir sangerseqR.Rcheck && mkdir sangerseqR.buildbin-libdir sangerseqR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sangerseqR.buildbin-libdir sangerseqR_1.7.0.tar.gz >sangerseqR.Rcheck\00install.out 2>&1 && cp sangerseqR.Rcheck\00install.out sangerseqR-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=sangerseqR.buildbin-libdir --install="check:sangerseqR-install.out" --force-multiarch --no-vignettes --timings sangerseqR_1.7.0.tar.gz

StartedAt: 2015-10-27 05:54:34 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 05:56:23 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 109.0 seconds

RetCode: 0

Status:  OK

CheckDir: sangerseqR.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf sangerseqR.buildbin-libdir sangerseqR.Rcheck && mkdir sangerseqR.buildbin-libdir sangerseqR.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sangerseqR.buildbin-libdir sangerseqR_1.7.0.tar.gz >sangerseqR.Rcheck\00install.out 2>&1 && cp sangerseqR.Rcheck\00install.out sangerseqR-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=sangerseqR.buildbin-libdir --install="check:sangerseqR-install.out" --force-multiarch --no-vignettes --timings sangerseqR_1.7.0.tar.gz
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* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/sangerseqR.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sangerseqR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sangerseqR' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sangerseqR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [3s]
 [3s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [3s]
 [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'sangerseqR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sangerseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangerseqR' as sangerseqR_1.7.0.zip
* DONE (sangerseqR)

name	user	system	elapsed
PolyPeakParser	0	0	0
abif-class	0.12	0.00	0.12
chromatogram	0.86	0.00	0.92
makeBaseCalls	0.58	0.00	0.58
read.abif	0.14	0.00	0.14
read.scf	0.28	0.00	0.28
readsangerseq	0.52	0.00	0.52
sangerseq-class	0.5	0.0	0.5
sangerseqAccessors	0.04	0.02	0.06
scf-class	0.29	0.00	0.28
setAllelePhase	2.48	0.01	2.52

name	user	system	elapsed
PolyPeakParser	0	0	0
abif-class	0.14	0.00	0.14
chromatogram	1.11	0.00	1.11
makeBaseCalls	0.90	0.00	0.91
read.abif	0.13	0.00	0.13
read.scf	0.45	0.00	0.45
readsangerseq	0.44	0.00	0.44
sangerseq-class	0.51	0.00	0.51
sangerseqAccessors	0.07	0.00	0.06
scf-class	0.39	0.00	0.39
setAllelePhase	2.73	0.02	2.77