BioC 3.3: CHECK report for supraHex on linux2.bioconductor.org

Package: supraHex

Version: 1.9.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.9.0.tar.gz

StartedAt: 2015-10-27 08:28:00 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 08:28:38 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 38.0 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.030	0.012	0.043
sCompReorder	0.518	0.000	0.518
sDistance	0.082	0.000	0.082
sDmat	0.093	0.008	0.101
sDmatCluster	0.194	0.000	0.194
sDmatMinima	0.172	0.000	0.172
sHexDist	0.006	0.000	0.006
sHexGrid	0.003	0.000	0.003
sInitial	0.003	0.000	0.003
sMapOverlay	0.15	0.00	0.15
sNeighAny	0.007	0.000	0.007
sNeighDirect	0.005	0.000	0.005
sPipeline	0.219	0.000	0.219
sTopology	0.014	0.000	0.014
sTrainBatch	0.035	0.000	0.036
sTrainSeq	0.25	0.00	0.25
sTrainology	0.004	0.000	0.003
sWriteData	0.176	0.000	0.176
visColoralpha	0.004	0.003	0.005
visColorbar	0.031	0.001	0.033
visColormap	0.004	0.000	0.004
visCompReorder	0.797	0.012	0.809
visDmatCluster	0.21	0.00	0.21
visDmatHeatmap	0.227	0.000	0.227
visHeatmap	0.135	0.000	0.135
visHeatmapAdv	0.337	0.004	0.341
visHexAnimate	0.001	0.000	0.001
visHexComp	0.090	0.000	0.091
visHexGrid	0.083	0.000	0.083
visHexMapping	1.307	0.019	1.329
visHexMulComp	1.180	0.004	1.184
visHexPattern	1.731	0.012	1.743
visKernels	0.009	0.000	0.008
visTreeBootstrap	0.158	0.000	0.158
visVp	0.019	0.000	0.019