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BioC 3.3: CHECK report for INSPEcT on windows2.bioconductor.org

This page was generated on 2015-10-27 12:16:09 -0400 (Tue, 27 Oct 2015).

Package 532/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
INSPEcT 1.1.0
Stefano de Pretis
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/INSPEcT
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ TIMEOUT ] OK 

Summary

Package: INSPEcT
Version: 1.1.0
Command: rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_1.1.0.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_1.1.0.tar.gz
StartedAt: 2015-10-27 03:24:13 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 04:04:17 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 2400.3 seconds
RetCode: None
Status:  TIMEOUT  
CheckDir: INSPEcT.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf INSPEcT.buildbin-libdir INSPEcT.Rcheck && mkdir INSPEcT.buildbin-libdir INSPEcT.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=INSPEcT.buildbin-libdir INSPEcT_1.1.0.tar.gz >INSPEcT.Rcheck\00install.out 2>&1 && cp INSPEcT.Rcheck\00install.out INSPEcT-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=INSPEcT.buildbin-libdir --install="check:INSPEcT-install.out" --force-multiarch --no-vignettes --timings INSPEcT_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/INSPEcT.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'INSPEcT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'INSPEcT' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'INSPEcT' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   3.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from 'INSPEcT' for: 'AIC'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from 'INSPEcT' for: 'AIC'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ...

INSPEcT.Rcheck/00install.out:


install for i386

* installing *source* package 'INSPEcT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'INSPEcT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'INSPEcT' as INSPEcT_1.1.0.zip
* DONE (INSPEcT)

INSPEcT.Rcheck/examples_i386/INSPEcT-Ex.timings:

nameusersystemelapsed
AIC-INSPEcT-method0.020.000.01
Extract0.070.000.08
chisqmodel0.040.000.03
chisqtest000
combine0.100.000.09
geneClass0.030.000.03
getModel0.020.000.01
inHeatmap0.030.000.03
labeledSF0.010.000.02
logLik0.020.000.02
makeGtfFromDb2.700.122.84
makeModelRates0.580.000.58
makeRPKMs000