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BioC 3.3: BUILD BIN report for Rtreemix on morelia

This page was generated on 2016-04-21 13:20:29 -0700 (Thu, 21 Apr 2016).

Package 1021/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rtreemix 1.33.0
Jasmina Bogojeska
Snapshot Date: 2016-04-20 17:20:35 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix
Last Changed Rev: 109592 / Revision: 116626
Last Changed Date: 2015-10-13 12:59:53 -0700 (Tue, 13 Oct 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: Rtreemix
Version: 1.33.0
Command: rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rtreemix_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Rtreemix.buildbin-libdir
StartedAt: 2016-04-21 09:22:07 -0700 (Thu, 21 Apr 2016)
EndedAt: 2016-04-21 09:22:44 -0700 (Thu, 21 Apr 2016)
EllapsedTime: 36.5 seconds
RetCode: 0
Status:  OK 
PackageFile: Rtreemix_1.33.0.tgz
PackageFileSize: 718.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rtreemix_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Rtreemix.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Rtreemix.buildbin-libdir Rtreemix_1.33.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Rtreemix’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Rtreemix.cc -o Rtreemix.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c Rtreemix_patch.cc -o Rtreemix_patch.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c WrapGraph.cc -o WrapGraph.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c cfunctions.cc -o cfunctions.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c kmeans.cc -o kmeans.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c max_weight_branch.cc -o max_weight_branch.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c mtree.cc -o mtree.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c mtreemix.cc -o mtreemix.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c replaceleda.cc -o replaceleda.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Rtreemix.so Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/Rtreemix.buildbin-libdir/Rtreemix/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘print’ from package ‘base’ in package ‘Rtreemix’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rtreemix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"