VegaMC 3.9.0
Sandro Morganella
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VegaMC | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
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### Running command:
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### chmod a+r VegaMC -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data VegaMC
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* checking for file 'VegaMC/DESCRIPTION' ... OK
* preparing 'VegaMC':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "c:\biocbld\bbs-3.3-bioc\tmpdir\RtmpKYh9JI\Rinst23e4190b341c" --no-multiarch "c:/biocbld/bbs-3.3-bioc/tmpdir/RtmpKYh9JI/Rbuild23e47c3d45d9/VegaMC"' had status 1
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* installing *source* package 'VegaMC' ...
** libs
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c sort_data.c -o sort_data.o
gcc -m64 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
gcc -m64 -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to c:/biocbld/bbs-3.3-bioc/tmpdir/RtmpKYh9JI/Rinst23e4190b341c/VegaMC/libs/x64
** R
** inst
** preparing package for lazy loading
Error : class "GIntervalTree" is not exported by 'namespace:GenomicRanges'
Error : package 'genoset' could not be loaded
ERROR: lazy loading failed for package 'VegaMC'
* removing 'c:/biocbld/bbs-3.3-bioc/tmpdir/RtmpKYh9JI/Rinst23e4190b341c/VegaMC'
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ERROR: package installation failed