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BioC experimental data: CHECK report for cnvGSAdata on windows2.bioconductor.org

This page was generated on 2015-10-24 19:25:50 -0400 (Sat, 24 Oct 2015).

Package 46/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cnvGSAdata 1.7.0
Joseph Lugo
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/cnvGSAdata
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: cnvGSAdata
Version: 1.7.0
Command: rm -rf cnvGSAdata.buildbin-libdir cnvGSAdata.Rcheck && mkdir cnvGSAdata.buildbin-libdir cnvGSAdata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cnvGSAdata.buildbin-libdir cnvGSAdata_1.7.0.tar.gz >cnvGSAdata.Rcheck\00install.out 2>&1 && cp cnvGSAdata.Rcheck\00install.out cnvGSAdata-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=cnvGSAdata.buildbin-libdir --install="check:cnvGSAdata-install.out" --force-multiarch --no-vignettes --timings cnvGSAdata_1.7.0.tar.gz
StartedAt: 2015-10-24 11:59:32 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:00:53 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 80.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: cnvGSAdata.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   rm -rf cnvGSAdata.buildbin-libdir cnvGSAdata.Rcheck && mkdir cnvGSAdata.buildbin-libdir cnvGSAdata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cnvGSAdata.buildbin-libdir cnvGSAdata_1.7.0.tar.gz >cnvGSAdata.Rcheck\00install.out 2>&1 && cp cnvGSAdata.Rcheck\00install.out cnvGSAdata-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=cnvGSAdata.buildbin-libdir --install="check:cnvGSAdata-install.out" --force-multiarch --no-vignettes --timings cnvGSAdata_1.7.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/cnvGSAdata.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cnvGSAdata/DESCRIPTION' ... OK
* this is package 'cnvGSAdata' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cnvGSAdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.0Mb
  sub-directories of 1Mb or more:
    data      5.2Mb
    extdata   3.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                              old_size new_size compress
  cnvGSA_input_example.RData     2.4Mb    1.2Mb       xz
  cnvGSA_output_example.RData    2.5Mb    768Kb       xz
  gs_data_example.RData          310Kb    207Kb       xz
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
enrGMT_AGP_demo.gmt 5.63    0.1    5.72
** running examples for arch 'x64' ... [7s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/cnvGSAdata.Rcheck/00check.log'
for details.


cnvGSAdata.Rcheck/00install.out:


install for i386

* installing *source* package 'cnvGSAdata' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'cnvGSAdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cnvGSAdata' as cnvGSAdata_1.7.0.zip
* DONE (cnvGSAdata)

cnvGSAdata.Rcheck/examples_i386/cnvGSAdata-Ex.timings:

nameusersystemelapsed
cnv_AGP_demo.txt0.040.010.07
enrGMT_AGP_demo.gmt5.630.105.72
enrGeneric_AGP_demo.txt000
gene_ID_demo.txt0.190.030.21
kl_gene_AGP_demo.txt000
kl_loci_AGP_demo.txt0.010.000.02
ph_AGP_demo.txt0.020.000.02

cnvGSAdata.Rcheck/examples_x64/cnvGSAdata-Ex.timings:

nameusersystemelapsed
cnv_AGP_demo.txt0.050.000.05
enrGMT_AGP_demo.gmt4.310.074.37
enrGeneric_AGP_demo.txt000
gene_ID_demo.txt0.200.010.22
kl_gene_AGP_demo.txt000
kl_loci_AGP_demo.txt000
ph_AGP_demo.txt0.010.000.01