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BioC experimental data: CHECK report for fabiaData on windows2.bioconductor.org

This page was generated on 2015-10-24 19:25:51 -0400 (Sat, 24 Oct 2015).

Package 79/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fabiaData 1.9.0
Sepp Hochreiter
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/fabiaData
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: fabiaData
Version: 1.9.0
Command: rm -rf fabiaData.buildbin-libdir fabiaData.Rcheck && mkdir fabiaData.buildbin-libdir fabiaData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=fabiaData.buildbin-libdir fabiaData_1.9.0.tar.gz >fabiaData.Rcheck\00install.out 2>&1 && cp fabiaData.Rcheck\00install.out fabiaData-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=fabiaData.buildbin-libdir --install="check:fabiaData-install.out" --force-multiarch --no-vignettes --timings fabiaData_1.9.0.tar.gz
StartedAt: 2015-10-24 12:11:41 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:12:10 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 28.1 seconds
RetCode: 0
Status:  OK  
CheckDir: fabiaData.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf fabiaData.buildbin-libdir fabiaData.Rcheck && mkdir fabiaData.buildbin-libdir fabiaData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=fabiaData.buildbin-libdir fabiaData_1.9.0.tar.gz >fabiaData.Rcheck\00install.out 2>&1 && cp fabiaData.Rcheck\00install.out fabiaData-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=fabiaData.buildbin-libdir --install="check:fabiaData-install.out" --force-multiarch --no-vignettes --timings fabiaData_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/fabiaData.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabiaData/DESCRIPTION' ... OK
* this is package 'fabiaData' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fabiaData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENCE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'fabiaData/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("Citation: S. Hochreiter et al.,", "\n",     "FABIA: Factor Analysis for Bicluster Acquisition,", "\n",     "Bioinformatics 26(12):1520-1527, 2010.", "\n", "BibTex: enter 'toBibtex(citation(\"fabia\"))'",     "\n\n", "Homepage: http://www.bioinf.jku.at/software/fabia/fabia.html",     "\n\n", "fabiaData Package Version ", version)

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/fabiaData.Rcheck/00check.log'
for details.


fabiaData.Rcheck/00install.out:


install for i386

* installing *source* package 'fabiaData' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'fabiaData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fabiaData' as fabiaData_1.9.0.zip
* DONE (fabiaData)

fabiaData.Rcheck/examples_i386/fabiaData-Ex.timings:

nameusersystemelapsed
fabiaData000
fabiaDataVersion000

fabiaData.Rcheck/examples_x64/fabiaData-Ex.timings:

nameusersystemelapsed
fabiaData000
fabiaDataVersion000