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BioC 3.4: BUILD BIN report for CRISPRseek on moscato1

This page was generated on 2016-09-21 03:45:25 -0700 (Wed, 21 Sep 2016).

Package 270/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CRISPRseek 1.13.12
Lihua Julie Zhu
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CRISPRseek
Last Changed Rev: 121148 / Revision: 121152
Last Changed Date: 2016-09-19 13:22:18 -0700 (Mon, 19 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK [ OK ]YES, new version is higher than in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: CRISPRseek
Version: 1.13.12
Command: cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.13.12.zip . & cd ../..
StartedAt: 2016-09-20 18:55:32 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 18:55:46 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 13.9 seconds
RetCode: 0
Status:  OK  
PackageFile: CRISPRseek_1.13.12.zip
PackageFileSize: 745.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd CRISPRseek.buildbin-libdir/CRISPRseek && zip -r ../../CRISPRseek_1.13.12.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (188 bytes security) (deflated 56%)
  adding: DESCRIPTION (188 bytes security) (deflated 46%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/CRISPRseek.pdf (188 bytes security) (deflated 15%)
  adding: doc/CRISPRseek.R (188 bytes security) (deflated 83%)
  adding: doc/CRISPRseek.Rnw (188 bytes security) (deflated 70%)
  adding: doc/index.html (188 bytes security) (deflated 59%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/cpf1.fa (188 bytes security) (deflated 39%)
  adding: extdata/DoenchNBT2014.csv (188 bytes security) (deflated 49%)
  adding: extdata/ForTestinguniqueREs.RData (188 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearch/ (208 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearch/gRNAsCRISPRseek.bed (188 bytes security) (deflated 13%)
  adding: extdata/gRNAProvidedSearch/OfftargetAnalysis.xls (188 bytes security) (deflated 68%)
  adding: extdata/gRNAProvidedSearch/REcutDetails.xls (188 bytes security) (deflated 29%)
  adding: extdata/gRNAProvidedSearch/Summary.xls (188 bytes security) (deflated 61%)
  adding: extdata/gRNAProvidedSearchNOoffTarget/ (208 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearchNOoffTarget/OfftargetAnalysis.xls (188 bytes security) (deflated 52%)
  adding: extdata/gRNAProvidedSearchNOoffTarget/Summary.xls (188 bytes security) (deflated 62%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/ (208 bytes security) (stored 0%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/gRNAsCRISPRseek.bed (188 bytes security) (deflated 11%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/OfftargetAnalysis.xls (188 bytes security) (deflated 52%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/REcutDetails.xls (188 bytes security) (deflated 24%)
  adding: extdata/gRNAProvidedSearchNOoffTargetNoAnn/Summary.xls (188 bytes security) (deflated 62%)
  adding: extdata/hits.txt (188 bytes security) (deflated 73%)
  adding: extdata/inputseq.fa (188 bytes security) (deflated 13%)
  adding: extdata/NatureBiot2016SuppTable19DoenchRoot.csv (188 bytes security) (deflated 57%)
  adding: extdata/NEBenzymes.fa (188 bytes security) (deflated 55%)
  adding: extdata/pairedSearch/ (208 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withoutRE/ (208 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withoutRE/OfftargetAnalysis.xls (188 bytes security) (deflated 69%)
  adding: extdata/pairedSearch/withoutRE/pairedgRNAs.xls (188 bytes security) (deflated 36%)
  adding: extdata/pairedSearch/withoutRE/REcutDetails.xls (188 bytes security) (deflated 84%)
  adding: extdata/pairedSearch/withoutRE/Summary.xls (188 bytes security) (deflated 61%)
  adding: extdata/pairedSearch/withRE/ (208 bytes security) (stored 0%)
  adding: extdata/pairedSearch/withRE/OfftargetAnalysis.xls (188 bytes security) (deflated 69%)
  adding: extdata/pairedSearch/withRE/pairedgRNAs.xls (188 bytes security) (deflated 36%)
  adding: extdata/pairedSearch/withRE/REcutDetails.xls (188 bytes security) (deflated 84%)
  adding: extdata/pairedSearch/withRE/Summary.xls (188 bytes security) (deflated 61%)
  adding: extdata/recreateTestResults.R (188 bytes security) (deflated 80%)
  adding: extdata/RIPK1stop.fa (188 bytes security) (deflated 44%)
  adding: extdata/rs362331C.fa (188 bytes security) (deflated 19%)
  adding: extdata/rs362331T.fa (188 bytes security) (deflated 15%)
  adding: extdata/T2.fa (188 bytes security) (deflated 25%)
  adding: extdata/T2plus100OffTargets.bed (188 bytes security) (deflated 70%)
  adding: extdata/test.bed (188 bytes security) (deflated 21%)
  adding: extdata/testHsap_GATA1_ex2_gRNA1.fa (188 bytes security) (deflated 2%)
  adding: extdata/testMouse/ (208 bytes security) (stored 0%)
  adding: extdata/testMouse/NOorgAnn/ (208 bytes security) (stored 0%)
  adding: extdata/testMouse/NOorgAnn/mRIPK1stop.gbk (188 bytes security) (deflated 76%)
  adding: extdata/testMouse/NOorgAnn/OfftargetAnalysis.xls (188 bytes security) (deflated 86%)
  adding: extdata/testMouse/NOorgAnn/pairedgRNAs.xls (188 bytes security) (deflated 82%)
  adding: extdata/testMouse/NOorgAnn/REcutDetails.xls (188 bytes security) (deflated 80%)
  adding: extdata/testMouse/NOorgAnn/RIPK1stopallgRNAs.fa (188 bytes security) (deflated 73%)
  adding: extdata/testMouse/NOorgAnn/Summary.xls (188 bytes security) (deflated 75%)
  adding: extdata/testMouse/NOTannotateExon/ (208 bytes security) (stored 0%)
  adding: extdata/testMouse/NOTannotateExon/mRIPK1stop.gbk (188 bytes security) (deflated 76%)
  adding: extdata/testMouse/NOTannotateExon/OfftargetAnalysis.xls (188 bytes security) (deflated 85%)
  adding: extdata/testMouse/NOTannotateExon/pairedgRNAs.xls (188 bytes security) (deflated 82%)
  adding: extdata/testMouse/NOTannotateExon/REcutDetails.xls (188 bytes security) (deflated 80%)
  adding: extdata/testMouse/NOTannotateExon/RIPK1stopallgRNAs.fa (188 bytes security) (deflated 73%)
  adding: extdata/testMouse/NOTannotateExon/Summary.xls (188 bytes security) (deflated 75%)
  adding: extdata/testMouse/WithorgAnn/ (208 bytes security) (stored 0%)
  adding: extdata/testMouse/WithorgAnn/mRIPK1stop.gbk (188 bytes security) (deflated 76%)
  adding: extdata/testMouse/WithorgAnn/OfftargetAnalysis.xls (188 bytes security) (deflated 86%)
  adding: extdata/testMouse/WithorgAnn/pairedgRNAs.xls (188 bytes security) (deflated 82%)
  adding: extdata/testMouse/WithorgAnn/REcutDetails.xls (188 bytes security) (deflated 80%)
  adding: extdata/testMouse/WithorgAnn/RIPK1stopallgRNAs.fa (188 bytes security) (deflated 73%)
  adding: extdata/testMouse/WithorgAnn/Summary.xls (188 bytes security) (deflated 75%)
  adding: extdata/testspeed.fa (188 bytes security) (deflated 97%)
  adding: extdata/tobi2.fa (188 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/ (208 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withoutRE/ (208 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withoutRE/OfftargetAnalysis.xls (188 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withoutRE/pairedgRNAs.xls (188 bytes security) (deflated 36%)
  adding: extdata/unPairedSearch/withoutRE/REcutDetails.xls (188 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withoutRE/Summary.xls (188 bytes security) (deflated 66%)
  adding: extdata/unPairedSearch/withRE/ (208 bytes security) (stored 0%)
  adding: extdata/unPairedSearch/withRE/OfftargetAnalysis.xls (188 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withRE/pairedgRNAs.xls (188 bytes security) (deflated 36%)
  adding: extdata/unPairedSearch/withRE/REcutDetails.xls (188 bytes security) (deflated 71%)
  adding: extdata/unPairedSearch/withRE/Summary.xls (188 bytes security) (deflated 64%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 60%)
  adding: help/CRISPRseek.rdb (188 bytes security) (deflated 1%)
  adding: help/CRISPRseek.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 70%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 63%)
  adding: MD5 (188 bytes security) (deflated 63%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 48%)
  adding: NEWS (188 bytes security) (deflated 69%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/CRISPRseek (188 bytes security) (deflated 41%)
  adding: R/CRISPRseek.rdb (188 bytes security) (deflated 1%)
  adding: R/CRISPRseek.rdx (188 bytes security) (stored 0%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/test_compare2Sequences.R (188 bytes security) (deflated 80%)
  adding: unitTests/test_getOfftargetScore2.R (188 bytes security) (deflated 70%)
  adding: unitTests/test_gRNAprovidedCompare2Seqs.R (188 bytes security) (deflated 72%)
  adding: unitTests/test_gRNAprovidedNoPAM.R (188 bytes security) (deflated 77%)
  adding: unitTests/test_mouse_orgAnn_annotateExon.R (188 bytes security) (deflated 82%)
  adding: unitTests/test_offTargetAnalysis.R (188 bytes security) (deflated 89%)