DESeq2 1.13.14
Michael Love
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DESeq2 | | Last Changed Rev: 120796 / Revision: 121152 | | Last Changed Date: 2016-09-07 18:07:40 -0700 (Wed, 07 Sep 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | [ OK ] | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DESeq2
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘DESeq2’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include" -fPIC -Wall -mtune=core2 -g -O2 -c DESeq2.cpp -o DESeq2.o
DESeq2.cpp:59:37: warning: 'i' is deprecated [-Wdeprecated-declarations]
double ddetb = ( det(b) * trace(b.i(true) * db) );
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
DESeq2.cpp:87:21: warning: 'i' is deprecated [-Wdeprecated-declarations]
arma::mat b_i = b.i(true);
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
DESeq2.cpp:90:37: warning: 'i' is deprecated [-Wdeprecated-declarations]
double ddetb = ( det(b) * trace(b.i(true) * db) );
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
DESeq2.cpp:348:56: warning: 'i' is deprecated [-Wdeprecated-declarations]
hat_matrix = sqrt(w) * x * (x.t() * w * x + ridge).i(true) * x.t() * sqrt(w);
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
DESeq2.cpp:351:37: warning: 'i' is deprecated [-Wdeprecated-declarations]
sigma = (x.t() * w * x + ridge).i(true) * x.t() * w * x * (x.t() * w * x + ridge).i(true);
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
DESeq2.cpp:351:87: warning: 'i' is deprecated [-Wdeprecated-declarations]
sigma = (x.t() * w * x + ridge).i(true) * x.t() * w * x * (x.t() * w * x + ridge).i(true);
^
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include/armadillo_bits/Base_bones.hpp:21:51: note: 'i' has been explicitly marked deprecated here
arma_deprecated inline const Op<derived,op_inv> i(const bool ) const; //!< kept only for compatibility with old user code
^
6 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RcppArmadillo/include" -fPIC -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DESeq2.so DESeq2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.3/Resources/library/DESeq2/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)