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BioC 3.4: CHECK report for MantelCorr on moscato1

This page was generated on 2016-09-21 03:41:41 -0700 (Wed, 21 Sep 2016).

Package 686/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MantelCorr 1.43.0
Brian Steinmeyer
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MantelCorr
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MantelCorr
Version: 1.43.0
Command: rm -rf MantelCorr.buildbin-libdir MantelCorr.Rcheck && mkdir MantelCorr.buildbin-libdir MantelCorr.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MantelCorr.buildbin-libdir MantelCorr_1.43.0.tar.gz >MantelCorr.Rcheck\00install.out 2>&1 && cp MantelCorr.Rcheck\00install.out MantelCorr-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MantelCorr.buildbin-libdir --install="check:MantelCorr-install.out" --force-multiarch --no-vignettes --timings MantelCorr_1.43.0.tar.gz
StartedAt: 2016-09-20 11:27:41 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 11:28:11 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 30.4 seconds
RetCode: 0
Status:  OK  
CheckDir: MantelCorr.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf MantelCorr.buildbin-libdir MantelCorr.Rcheck && mkdir MantelCorr.buildbin-libdir MantelCorr.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MantelCorr.buildbin-libdir MantelCorr_1.43.0.tar.gz >MantelCorr.Rcheck\00install.out 2>&1 && cp MantelCorr.Rcheck\00install.out MantelCorr-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MantelCorr.buildbin-libdir --install="check:MantelCorr-install.out" --force-multiarch --no-vignettes --timings MantelCorr_1.43.0.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/MantelCorr.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MantelCorr/DESCRIPTION' ... OK
* this is package 'MantelCorr' version '1.43.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MantelCorr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MantelCorr.Rcheck/00install.out:


install for i386

* installing *source* package 'MantelCorr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MantelCorr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MantelCorr' as MantelCorr_1.43.0.zip
* DONE (MantelCorr)

MantelCorr.Rcheck/examples_i386/MantelCorr-Ex.timings:

nameusersystemelapsed
ClusterGeneList0.70.00.7
ClusterList0.690.000.69
DistMatrices0.110.000.11
GetClusters0.020.000.01
GolubTrain0.070.000.08
MantelCorrs0.140.000.14
PermutationTest0.710.000.70

MantelCorr.Rcheck/examples_x64/MantelCorr-Ex.timings:

nameusersystemelapsed
ClusterGeneList0.910.000.90
ClusterList0.850.000.86
DistMatrices0.130.000.13
GetClusters0.020.000.02
GolubTrain0.080.000.07
MantelCorrs0.170.000.18
PermutationTest0.810.000.81