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BioC 3.4: CHECK report for MultiAssayExperiment on zin1

This page was generated on 2016-09-21 03:40:43 -0700 (Wed, 21 Sep 2016).

Package 791/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MultiAssayExperiment 0.101.49
Marcel Ramos
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MultiAssayExperiment
Last Changed Rev: 120425 / Revision: 121152
Last Changed Date: 2016-08-25 11:30:59 -0700 (Thu, 25 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MultiAssayExperiment
Version: 0.101.49
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_0.101.49.tar.gz
StartedAt: 2016-09-20 09:43:14 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 09:44:55 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 101.5 seconds
RetCode: 0
Status:  OK 
CheckDir: MultiAssayExperiment.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_0.101.49.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/MultiAssayExperiment.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MultiAssayExperiment/DESCRIPTION’ ... OK
* this is package ‘MultiAssayExperiment’ version ‘0.101.49’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiAssayExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MultiAssayExperiment.Rcheck/00install.out:

* installing *source* package ‘MultiAssayExperiment’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MultiAssayExperiment)

MultiAssayExperiment.Rcheck/MultiAssayExperiment-Ex.timings:

nameusersystemelapsed
API0.0000.0040.001
ExperimentList-class0.0080.0040.011
ExperimentList0.0760.0000.078
MultiAssayExperiment-class0.1080.0000.108
MultiAssayExperiment0.4560.0040.478
PrepMultiAssay0.7400.0080.748
RangedRaggedAssay0.1160.0040.122
assay-RangedRaggedAssay-ANY-method0.2560.0000.259
experiments-set0.3160.0000.316
experiments0.3200.0000.322
getHits0.7440.0040.767
hasAssay0.0040.0000.004
mapToList0.0480.0000.047
sampleMap-set0.3200.0000.321
sampleMap0.0200.0000.019
subsetByAssay0.4920.0000.495
subsetByColumn0.7000.0000.697
subsetByRow0.6080.0080.617