PGA 1.3.15
Bo Wen , Shaohang Xu
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PGA | | Last Changed Rev: 119627 / Revision: 121152 | | Last Changed Date: 2016-07-25 20:49:36 -0700 (Mon, 25 Jul 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | OK | [ OK ] | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### cd PGA.buildbin-libdir/PGA && zip -r ../../PGA_1.3.15.zip . & cd ../..
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adding: CITATION (188 bytes security) (deflated 61%)
adding: DESCRIPTION (188 bytes security) (deflated 43%)
adding: doc/ (208 bytes security) (stored 0%)
adding: doc/index.html (188 bytes security) (deflated 57%)
adding: doc/PGA.pdf (188 bytes security) (deflated 19%)
adding: doc/PGA.R (188 bytes security) (deflated 74%)
adding: doc/PGA.Rnw (188 bytes security) (deflated 70%)
adding: extdata/ (208 bytes security) (stored 0%)
adding: extdata/annotation/ (208 bytes security) (stored 0%)
adding: extdata/annotation/exon_anno.RData (188 bytes security) (stored 0%)
adding: extdata/annotation/ids.RData (188 bytes security) (stored 0%)
adding: extdata/annotation/procodingseq.RData (188 bytes security) (stored 0%)
adding: extdata/annotation/proseq.RData (188 bytes security) (deflated 0%)
adding: extdata/annotation/splicemax.RData (188 bytes security) (stored 0%)
adding: extdata/annotation/txdb.sqlite (188 bytes security) (deflated 66%)
adding: extdata/input/ (208 bytes security) (stored 0%)
adding: extdata/input/junctions.bed (188 bytes security) (deflated 56%)
adding: extdata/input/mascot.dat (188 bytes security) (deflated 63%)
adding: extdata/input/msgfplus.mzid (188 bytes security) (deflated 92%)
adding: extdata/input/pga.mgf (188 bytes security) (deflated 56%)
adding: extdata/input/PGA.vcf (188 bytes security) (deflated 71%)
adding: extdata/input/transcripts.gtf (188 bytes security) (deflated 92%)
adding: extdata/input/Trinity.fasta (188 bytes security) (deflated 66%)
adding: help/ (208 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 53%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: help/PGA.rdb (188 bytes security) (deflated 1%)
adding: help/PGA.rdx (188 bytes security) (stored 0%)
adding: html/ (208 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 63%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 59%)
adding: MD5 (188 bytes security) (deflated 44%)
adding: Meta/ (208 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 56%)
adding: NEWS (188 bytes security) (deflated 43%)
adding: parser4PGA.jar (188 bytes security) (deflated 10%)
adding: R/ (208 bytes security) (stored 0%)
adding: R/PGA (188 bytes security) (deflated 41%)
adding: R/PGA.rdb (188 bytes security) (deflated 1%)
adding: R/PGA.rdx (188 bytes security) (stored 0%)
adding: unitTests/ (208 bytes security) (stored 0%)
adding: unitTests/test_check_parser.R (188 bytes security) (deflated 19%)