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BioC 3.4: CHECK report for ecolitk on moscato1

This page was generated on 2016-09-21 03:41:16 -0700 (Wed, 21 Sep 2016).

Package 354/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ecolitk 1.45.0
Laurent Gautier
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ecolitk
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ecolitk
Version: 1.45.0
Command: rm -rf ecolitk.buildbin-libdir ecolitk.Rcheck && mkdir ecolitk.buildbin-libdir ecolitk.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ecolitk.buildbin-libdir ecolitk_1.45.0.tar.gz >ecolitk.Rcheck\00install.out 2>&1 && cp ecolitk.Rcheck\00install.out ecolitk-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ecolitk.buildbin-libdir --install="check:ecolitk-install.out" --force-multiarch --no-vignettes --timings ecolitk_1.45.0.tar.gz
StartedAt: 2016-09-20 07:37:09 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 07:37:55 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 46.2 seconds
RetCode: 0
Status:  OK  
CheckDir: ecolitk.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ecolitk.buildbin-libdir ecolitk.Rcheck && mkdir ecolitk.buildbin-libdir ecolitk.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ecolitk.buildbin-libdir ecolitk_1.45.0.tar.gz >ecolitk.Rcheck\00install.out 2>&1 && cp ecolitk.Rcheck\00install.out ecolitk-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ecolitk.buildbin-libdir --install="check:ecolitk-install.out" --force-multiarch --no-vignettes --timings ecolitk_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/ecolitk.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ecolitk/DESCRIPTION' ... OK
* this is package 'ecolitk' version '1.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ecolitk' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'graph' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.buildGENEPRODFUN: possible error in strsplit(line, "\t", extended =
  TRUE): unused argument (extended = TRUE)
* checking Rd files ... NOTE
prepare_Rd: multiFun.Rd:16-18: Dropping empty section \details
prepare_Rd: polar2xy.Rd:28-33: Dropping empty section \value
prepare_Rd: polygonChrom.Rd:59: Dropping empty section \seealso
prepare_Rd: wstringapply.Rd:24-25: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/ecolitk.Rcheck/00check.log'
for details.


ecolitk.Rcheck/00install.out:


install for i386

* installing *source* package 'ecolitk' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ecolitk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ecolitk' as ecolitk_1.45.0.zip
* DONE (ecolitk)

ecolitk.Rcheck/examples_i386/ecolitk-Ex.timings:

nameusersystemelapsed
ecoli.data0.140.000.16
ecoligenome.operon0.090.000.09
linkedmultiget0.110.020.13
multiFun000
pointsCircle0.030.010.04
polar2xy0.020.000.02
polygonChrom0.060.000.13

ecolitk.Rcheck/examples_x64/ecolitk-Ex.timings:

nameusersystemelapsed
ecoli.data0.170.010.19
ecoligenome.operon0.050.020.06
linkedmultiget0.060.040.11
multiFun000
pointsCircle0.050.000.05
polar2xy0.010.020.03
polygonChrom0.060.020.08