Back to the "Multiple platform build/check report" A  B  C  D [E] F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: BUILD report for ensembldb on moscato1

This page was generated on 2016-09-21 03:46:56 -0700 (Wed, 21 Sep 2016).

Package 370/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ensembldb 1.5.13
Johannes Rainer
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ensembldb
Last Changed Rev: 120997 / Revision: 121152
Last Changed Date: 2016-09-16 05:08:26 -0700 (Fri, 16 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK [ ERROR ] skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: ensembldb
Version: 1.5.13
Command: chmod a+r ensembldb -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ensembldb
StartedAt: 2016-09-20 01:44:04 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 01:44:44 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 40.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ensembldb -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ensembldb
###
##############################################################################
##############################################################################


* checking for file 'ensembldb/DESCRIPTION' ... OK
* preparing 'ensembldb':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: ensembldb
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval,
    evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort,
    table, tapply, union, unique, unsplit, which, which.max,
    which.min

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Error : .onLoad failed in loadNamespace() for 'EnsDb.Hsapiens.v75', details:
  call: validityMethod(object)
  error: could not find function "dbHasRequiredTables"
Quitting from lines 50-59 (ensembldb.Rmd) 
Error: processing vignette 'ensembldb.Rmd' failed with diagnostics:
package or namespace load failed for 'EnsDb.Hsapiens.v75'
Execution halted