Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: BUILD BIN report for lfa on morelia

This page was generated on 2016-09-21 03:54:53 -0700 (Wed, 21 Sep 2016).

Package 653/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lfa 1.3.2
Wei Hao , John D. Storey
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lfa
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: lfa
Version: 1.3.2
Command: rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.3.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
StartedAt: 2016-09-20 15:07:56 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:08:00 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 3.4 seconds
RetCode: 0
Status:  OK 
PackageFile: lfa_1.3.2.tgz
PackageFileSize: 398.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh lfa_1.3.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R lfa.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=lfa.buildbin-libdir lfa_1.3.2.tar.gz'
>>>>>>> 

* installing *source* package ‘lfa’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c fastmat.c -o fastmat.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lfa-init.c -o lfa-init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lfa.c -o lfa.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c lreg.c -o lreg.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lfa.so fastmat.o lfa-init.o lfa.o lreg.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/lfa.buildbin-libdir/lfa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lfa)


>>>>>>> 
>>>>>>> FIXING LINKS FOR lfa.buildbin-libdir/lfa/libs//lfa.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "lfa.buildbin-libdir/lfa/libs//lfa.so"