Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for microRNA on moscato1

This page was generated on 2016-09-21 03:42:36 -0700 (Wed, 21 Sep 2016).

Package 746/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microRNA 1.31.0
"James F. Reid"
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/microRNA
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: microRNA
Version: 1.31.0
Command: rm -rf microRNA.buildbin-libdir microRNA.Rcheck && mkdir microRNA.buildbin-libdir microRNA.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=microRNA.buildbin-libdir microRNA_1.31.0.tar.gz >microRNA.Rcheck\00install.out 2>&1 && cp microRNA.Rcheck\00install.out microRNA-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=microRNA.buildbin-libdir --install="check:microRNA-install.out" --force-multiarch --no-vignettes --timings microRNA_1.31.0.tar.gz
StartedAt: 2016-09-20 12:15:28 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 12:17:27 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 118.5 seconds
RetCode: 0
Status:  OK  
CheckDir: microRNA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf microRNA.buildbin-libdir microRNA.Rcheck && mkdir microRNA.buildbin-libdir microRNA.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=microRNA.buildbin-libdir microRNA_1.31.0.tar.gz >microRNA.Rcheck\00install.out 2>&1 && cp microRNA.Rcheck\00install.out microRNA-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=microRNA.buildbin-libdir --install="check:microRNA-install.out" --force-multiarch --no-vignettes --timings microRNA_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/microRNA.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'microRNA/DESCRIPTION' ... OK
* this is package 'microRNA' version '1.31.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'Rlibstree'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'microRNA' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data      5.4Mb
    extdata   2.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biostrings'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
matchSeeds 5.25   0.01    5.26
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/microRNA.Rcheck/00check.log'
for details.


microRNA.Rcheck/00install.out:


install for i386

* installing *source* package 'microRNA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'microRNA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.31.0.zip
* DONE (microRNA)

microRNA.Rcheck/examples_i386/microRNA-Ex.timings:

nameusersystemelapsed
RNA2DNA000
get_selfhyb_subseq0.010.000.02
hsSeqs0.020.000.01
hsTargets0.620.020.64
matchSeeds5.250.015.26
mmSeqs0.010.000.01
mmTargets1.840.021.86
s3utr000
seedRegions0.000.010.02

microRNA.Rcheck/examples_x64/microRNA-Ex.timings:

nameusersystemelapsed
RNA2DNA000
get_selfhyb_subseq0.020.000.01
hsSeqs0.010.000.02
hsTargets0.690.020.70
matchSeeds4.880.064.95
mmSeqs000
mmTargets1.880.001.89
s3utr000
seedRegions0.020.000.02