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BioC 3.4: INSTALL report for pRoloc on moscato1

This page was generated on 2016-09-21 03:44:30 -0700 (Wed, 21 Sep 2016).

Package 927/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRoloc 1.13.15
Laurent Gatto
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pRoloc
Last Changed Rev: 120974 / Revision: 121152
Last Changed Date: 2016-09-14 23:36:15 -0700 (Wed, 14 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  ERROR 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  ERROR  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  ERROR  OK 

Summary

Package: pRoloc
Version: 1.13.15
Command: rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/pRoloc_1.13.15.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=pRoloc.buildbin-libdir --merge-multiarch pRoloc_1.13.15.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.13.15.zip && rm pRoloc_1.13.15.tar.gz pRoloc_1.13.15.zip
StartedAt: 2016-09-19 21:17:45 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 21:18:51 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 65.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/pRoloc_1.13.15.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=pRoloc.buildbin-libdir --merge-multiarch pRoloc_1.13.15.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.13.15.zip  && rm pRoloc_1.13.15.tar.gz pRoloc_1.13.15.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 2600k    0  8515    0     0  55339      0  0:00:48 --:--:--  0:00:48 56766
100 2600k  100 2600k    0     0  7011k      0 --:--:-- --:--:-- --:--:-- 7085k

install for i386

* installing *source* package 'pRoloc' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o pRoloc.dll tmp.def pRoloc.o -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning in fun(libname, pkgname) :
  mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at 
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
  mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at 
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.

install for x64

* installing *source* package 'pRoloc' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.4-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"c:/local323/include"     -O2 -Wall  -mtune=core2 -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o pRoloc.dll tmp.def pRoloc.o -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/x64
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
  mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at 
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
* MD5 sums
packaged installation of 'pRoloc' as pRoloc_1.13.15.zip
* DONE (pRoloc)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'pRoloc' successfully unpacked and MD5 sums checked