Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for randPack on moscato1

This page was generated on 2016-09-21 03:43:29 -0700 (Wed, 21 Sep 2016).

Package 969/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
randPack 1.19.0
Robert Gentleman
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/randPack
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: randPack
Version: 1.19.0
Command: rm -rf randPack.buildbin-libdir randPack.Rcheck && mkdir randPack.buildbin-libdir randPack.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=randPack.buildbin-libdir randPack_1.19.0.tar.gz >randPack.Rcheck\00install.out 2>&1 && cp randPack.Rcheck\00install.out randPack-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=randPack.buildbin-libdir --install="check:randPack-install.out" --force-multiarch --no-vignettes --timings randPack_1.19.0.tar.gz
StartedAt: 2016-09-20 14:47:36 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:48:24 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 48.9 seconds
RetCode: 0
Status:  OK  
CheckDir: randPack.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf randPack.buildbin-libdir randPack.Rcheck && mkdir randPack.buildbin-libdir randPack.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=randPack.buildbin-libdir randPack_1.19.0.tar.gz >randPack.Rcheck\00install.out 2>&1 && cp randPack.Rcheck\00install.out randPack-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=randPack.buildbin-libdir --install="check:randPack-install.out" --force-multiarch --no-vignettes --timings randPack_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/randPack.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'randPack/DESCRIPTION' ... OK
* this is package 'randPack' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.checkRand2CT : <anonymous>: no visible global function definition for
  'is'
.newEBC: no visible global function definition for 'is'
.newPBlock: no visible global function definition for 'is'
.newUrn: no visible global function definition for 'is'
addPData: no visible global function definition for 'is'
createTrial: no visible global function definition for 'new'
getCovariates : <anonymous> : <anonymous>: no visible binding for
  global variable 'slot'
getEnrolleeInfo: no visible global function definition for 'is'
getTreatment: no visible global function definition for 'is'
makeRandomizer: no visible global function definition for 'is'
makeRandomizer: no visible global function definition for 'new'
trtAlloc: no visible global function definition for 'is'
validPID: no visible global function definition for 'is'
show,ClinicalTrial: no visible global function definition for 'show'
Undefined global functions or variables:
  is new show slot
Consider adding
  importFrom("methods", "is", "new", "show", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... NOTE
prepare_Rd: getTreatment.Rd:20-21: Dropping empty section \details
prepare_Rd: getTreatment.Rd:22-23: Dropping empty section \value
prepare_Rd: makeRandomizer.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'D:/biocbld/bbs-3.4-bioc/meat/randPack.Rcheck/00check.log'
for details.


randPack.Rcheck/00install.out:


install for i386

* installing *source* package 'randPack' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'randPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'randPack' as randPack_1.19.0.zip
* DONE (randPack)

randPack.Rcheck/examples_i386/randPack-Ex.timings:

nameusersystemelapsed
CT10.010.010.03
ClinicalExperiment-class000
ClinicalTrial-class0.000.020.02
PatientData-class000
PatientID-class000
Randomizer-class000
SampleData0.020.000.01
createTrial000
getEnrolleeInfo000
getTreatment0.020.000.02
minimizePocSim000
simPats000
treatmentNames000

randPack.Rcheck/examples_x64/randPack-Ex.timings:

nameusersystemelapsed
CT10.010.000.02
ClinicalExperiment-class0.020.000.01
ClinicalTrial-class000
PatientData-class000
PatientID-class000
Randomizer-class000
SampleData000
createTrial000
getEnrolleeInfo0.000.020.01
getTreatment000
minimizePocSim0.020.000.02
simPats000
treatmentNames000