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BioC 3.4: BUILD report for rcellminer on morelia

This page was generated on 2016-09-21 03:54:17 -0700 (Wed, 21 Sep 2016).

Package 983/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rcellminer 1.5.2
Augustin Luna , Vinodh Rajapakse
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rcellminer
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  ERROR 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: rcellminer
Version: 1.5.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rcellminer
StartedAt: 2016-09-20 01:00:40 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 01:00:45 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rcellminer
###
##############################################################################
##############################################################################


* checking for file ‘rcellminer/DESCRIPTION’ ... OK
* preparing ‘rcellminer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘rcellminer’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
  call: fun(libname, pkgname)
  error: 
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.

Please install Java 1.8 and let R know which Java to use by running the config tool:

sudo R CMD javareconf

Then you will need to re-install rJava.

# re install fromfrom R
# install.packages('rJava', type='source')

=================
=================
         
Error : package ‘rcdk’ could not be loaded
ERROR: lazy loading failed for package ‘rcellminer’
* removing ‘/private/tmp/RtmpXK1okl/Rinst83342e9fc011/rcellminer’
      -----------------------------------
ERROR: package installation failed