BioC 3.4: CHECK report for roar on moscato1

Package: roar

Version: 1.9.1

Command: rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.9.1.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.9.1.tar.gz

StartedAt: 2016-09-20 15:43:06 -0700 (Tue, 20 Sep 2016)

EndedAt: 2016-09-20 15:47:30 -0700 (Tue, 20 Sep 2016)

EllapsedTime: 263.8 seconds

RetCode: 0

Status:  OK

CheckDir: roar.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.9.1.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.9.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/roar.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'roar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'roar' version '1.9.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'roar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'roar' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'roar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'roar' as roar_1.9.1.zip
* DONE (roar)

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.3	0.0	0.3
RoarDatasetFromFiles-constructor	0	0	0
RoarDatasetMultipleAPA-class	0	0	0
RoarDatasetMultipleAPA-constructor	0.20	0.05	0.25
RoarDatasetMultipleAPAFromFiles-constructor	0	0	0
computePairedPvals-method	0.72	0.01	0.73
computePvals-method	0.43	0.00	0.44
computeRoars-method	0.42	0.02	0.44
countPrePost-method	0.44	0.02	0.45
countResults-method	0.44	0.01	0.45
fpkmResults-method	0.48	0.00	0.49
pvalueCorrectFilter-method	0.45	0.02	0.46
pvalueFilter-method	0.46	0.01	0.47
standardFilter-method	0.46	0.00	0.47
totalResults-method	0.42	0.02	0.44

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.32	0.00	0.31
RoarDatasetFromFiles-constructor	0	0	0
RoarDatasetMultipleAPA-class	0.01	0.00	0.01
RoarDatasetMultipleAPA-constructor	0.28	0.00	0.28
RoarDatasetMultipleAPAFromFiles-constructor	0	0	0
computePairedPvals-method	0.88	0.00	0.88
computePvals-method	0.49	0.02	0.50
computeRoars-method	0.52	0.00	0.51
countPrePost-method	0.51	0.01	0.53
countResults-method	0.53	0.03	0.56
fpkmResults-method	0.55	0.00	0.55
pvalueCorrectFilter-method	0.51	0.01	0.53
pvalueFilter-method	0.51	0.03	0.55
standardFilter-method	0.55	0.00	0.54
totalResults-method	0.48	0.04	0.52