Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for ABAData on moscato1

This page was generated on 2016-09-21 21:57:25 -0700 (Wed, 21 Sep 2016).

Package 1/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ABAData 1.3.2
Steffi Grote
Snapshot Date: 2016-09-21 09:20:16 -0700 (Wed, 21 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ABAData
Last Changed Rev: 3773 / Revision: 3889
Last Changed Date: 2016-05-15 13:21:08 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: ABAData
Version: 1.3.2
Command: rm -rf ABAData.buildbin-libdir ABAData.Rcheck && mkdir ABAData.buildbin-libdir ABAData.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ABAData.buildbin-libdir ABAData_1.3.2.tar.gz >ABAData.Rcheck\00install.out 2>&1 && cp ABAData.Rcheck\00install.out ABAData-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ABAData.buildbin-libdir --install="check:ABAData-install.out" --force-multiarch --no-vignettes --timings ABAData_1.3.2.tar.gz
StartedAt: 2016-09-21 12:47:06 -0700 (Wed, 21 Sep 2016)
EndedAt: 2016-09-21 12:56:49 -0700 (Wed, 21 Sep 2016)
EllapsedTime: 583.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ABAData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ABAData.buildbin-libdir ABAData.Rcheck && mkdir ABAData.buildbin-libdir ABAData.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ABAData.buildbin-libdir ABAData_1.3.2.tar.gz >ABAData.Rcheck\00install.out 2>&1 && cp ABAData.Rcheck\00install.out ABAData-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=ABAData.buildbin-libdir --install="check:ABAData-install.out" --force-multiarch --no-vignettes --timings ABAData_1.3.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/ABAData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ABAData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ABAData' version '1.3.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ABAData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 58.0Mb
  sub-directories of 1Mb or more:
    data  57.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
datasets_ABAData 19.28   0.19   19.47
ABAData-package  15.20   0.11   15.30
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
datasets_ABAData 15.81   0.22   16.04
ABAData-package  13.04   0.06   13.11
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/ABAData.Rcheck/00check.log'
for details.


ABAData.Rcheck/00install.out:


install for i386

* installing *source* package 'ABAData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ABAData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ABAData' as ABAData_1.3.2.zip
* DONE (ABAData)

ABAData.Rcheck/examples_i386/ABAData-Ex.timings:

nameusersystemelapsed
ABAData-package15.20 0.1115.30
datasets_ABAData19.28 0.1919.47

ABAData.Rcheck/examples_x64/ABAData-Ex.timings:

nameusersystemelapsed
ABAData-package13.04 0.0613.11
datasets_ABAData15.81 0.2216.04