BioC experimental data: CHECK report for pRolocdata on zin1

Package: pRolocdata

Version: 1.11.8

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.11.8.tar.gz

StartedAt: 2016-09-21 12:08:01 -0700 (Wed, 21 Sep 2016)

EndedAt: 2016-09-21 12:09:58 -0700 (Wed, 21 Sep 2016)

EllapsedTime: 117.7 seconds

RetCode: 0

Status:  OK

CheckDir: pRolocdata.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.11.8.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.11.8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.3Mb
  sub-directories of 1Mb or more:
    data     13.3Mb
    extdata  20.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
andreyev2010 4.56   0.16   6.044
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

name	user	system	elapsed
E14TG2a	0.032	0.008	0.040
andreyev2010	4.560	0.160	6.044
andy2011	0.064	0.004	0.067
at_chloro	0.124	0.000	0.125
dunkley2006	0.016	0.000	0.014
fabre2015	0.236	0.000	0.234
foster2006	0.032	0.004	0.036
groen2014	3.592	0.028	3.629
hall2009	0.216	0.004	0.223
havugimana2012	0.440	0.032	0.472
hyperLOPIT2015	0.092	0.004	0.094
itzhak2016	0.852	0.024	0.876
kirkwood2013	0.052	0.000	0.050
kristensen2012	0.020	0.004	0.026
mulvey2015	4.408	0.072	4.501
nikolovski2012	0.404	0.012	0.465
nikolovski2014	0.308	0.012	0.322
pRolocdata	0.004	0.012	0.022
pRolocmetadata	0.016	0.004	0.017
rodriguez2012r1	0.432	0.020	0.453
stekhoven2014	0.284	0.004	0.289
tan2009	0.016	0.000	0.019
trotter2010	0.228	0.012	0.236