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This page was generated on 2017-04-15 16:20:22 -0400 (Sat, 15 Apr 2017).
| Package 296/1296 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| DAPAR 1.6.0 Samuel Wieczorek
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK |  | |||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | |||||
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| Package: DAPAR |
| Version: 1.6.0 |
| Command: rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.6.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.6.0.tar.gz |
| StartedAt: 2017-04-14 21:49:31 -0400 (Fri, 14 Apr 2017) |
| EndedAt: 2017-04-14 21:53:31 -0400 (Fri, 14 Apr 2017) |
| EllapsedTime: 240.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DAPAR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DAPAR.buildbin-libdir DAPAR.Rcheck && mkdir DAPAR.buildbin-libdir DAPAR.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAPAR.buildbin-libdir DAPAR_1.6.0.tar.gz >DAPAR.Rcheck\00install.out 2>&1 && cp DAPAR.Rcheck\00install.out DAPAR-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DAPAR.buildbin-libdir --install="check:DAPAR-install.out" --force-multiarch --no-vignettes --timings DAPAR_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/DAPAR.Rcheck' * using R version 3.3.3 (2017-03-06) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DAPAR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DAPAR' version '1.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DAPAR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
DAPAR.Rcheck/00install.out:
install for i386 * installing *source* package 'DAPAR' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'DAPAR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DAPAR' as DAPAR_1.6.0.zip * DONE (DAPAR)
DAPAR.Rcheck/examples_i386/DAPAR-Ex.timings:
| name | user | system | elapsed | |
| BuildAdjacencyMatrix | 0.14 | 0.08 | 0.22 | |
| BuildColumnToProteinDataset | 0.20 | 0.01 | 0.22 | |
| CountPep | 0.14 | 0.03 | 0.17 | |
| GraphPepProt | 0.44 | 0.00 | 0.44 | |
| MeanPeptides | 0.06 | 0.03 | 0.09 | |
| SumPeptides | 0.07 | 0.02 | 0.08 | |
| TopnPeptides | 1.26 | 0.05 | 1.31 | |
| boxPlotD | 0.05 | 0.00 | 0.05 | |
| compareNormalizationD | 0.03 | 0.03 | 0.06 | |
| corrMatrixD | 0.23 | 0.00 | 0.23 | |
| createMSnset | 0.11 | 0.00 | 0.11 | |
| deleteLinesFromIndices | 0.03 | 0.00 | 0.03 | |
| densityPlotD | 0.05 | 0.01 | 0.06 | |
| diffAna | 0.17 | 0.02 | 0.19 | |
| diffAnaComputeFDR | 0.06 | 0.00 | 0.06 | |
| diffAnaGetSignificant | 0.03 | 0.02 | 0.05 | |
| diffAnaLimma | 0.03 | 0.00 | 0.03 | |
| diffAnaSave | 0.05 | 0.00 | 0.05 | |
| diffAnaVolcanoplot | 0.05 | 0.00 | 0.04 | |
| diffAnaWelch | 0.03 | 0.01 | 0.05 | |
| getIndicesConditions | 0.03 | 0.00 | 0.03 | |
| getIndicesOfLinesToRemove | 0.03 | 0.02 | 0.05 | |
| getNumberOf | 0.03 | 0.00 | 0.04 | |
| getNumberOfEmptyLines | 0.04 | 0.00 | 0.04 | |
| getPaletteForLabels | 0.05 | 0.00 | 0.05 | |
| getPaletteForReplicates | 0.03 | 0.00 | 0.03 | |
| getPourcentageOfMV | 0.03 | 0.01 | 0.05 | |
| getProcessingInfo | 0.04 | 0.00 | 0.03 | |
| getProteinsStats | 0.07 | 0.00 | 0.08 | |
| heatmap.DAPAR | 0.5 | 0.0 | 0.5 | |
| heatmapD | 0.32 | 0.03 | 0.34 | |
| limmaCompleteTest | 0.04 | 0.00 | 0.05 | |
| mvFilter | 0.05 | 0.02 | 0.06 | |
| mvFilterFromIndices | 0.05 | 0.00 | 0.05 | |
| mvFilterGetIndices | 0.03 | 0.00 | 0.03 | |
| mvHisto | 0.04 | 0.01 | 0.06 | |
| mvImage | 0.16 | 0.00 | 0.15 | |
| mvImputation | 0.06 | 0.02 | 0.08 | |
| mvPerLinesHisto | 0.05 | 0.00 | 0.05 | |
| mvPerLinesHistoPerCondition | 0.03 | 0.00 | 0.03 | |
| mvTypePlot | 0.11 | 0.00 | 0.11 | |
| normalizeD | 0.04 | 0.01 | 0.07 | |
| pepAgregate | 0.10 | 0.02 | 0.11 | |
| proportionConRev | 0.08 | 0.00 | 0.07 | |
| removeLines | 0.04 | 0.00 | 0.05 | |
| varianceDistD | 0.03 | 0.00 | 0.03 | |
| violinPlotD | 0.13 | 0.00 | 0.13 | |
| wrapper.boxPlotD | 0.05 | 0.00 | 0.04 | |
| wrapper.compareNormalizationD | 0.06 | 0.00 | 0.07 | |
| wrapper.corrMatrixD | 0.19 | 0.01 | 0.20 | |
| wrapper.densityPlotD | 0.04 | 0.00 | 0.05 | |
| wrapper.diffAnaLimma | 0.03 | 0.00 | 0.03 | |
| wrapper.diffAnaWelch | 0.03 | 0.00 | 0.03 | |
| wrapper.heatmapD | 0.33 | 0.00 | 0.33 | |
| wrapper.mvHisto | 0.06 | 0.00 | 0.07 | |
| wrapper.mvImage | 0.14 | 0.03 | 0.17 | |
| wrapper.mvImputation | 0.05 | 0.02 | 0.06 | |
| wrapper.mvPerLinesHisto | 0.05 | 0.00 | 0.05 | |
| wrapper.mvPerLinesHistoPerCondition | 0.03 | 0.00 | 0.03 | |
| wrapper.mvTypePlot | 0.1 | 0.0 | 0.1 | |
| wrapper.normalizeD | 0.04 | 0.00 | 0.04 | |
| wrapper.varianceDistD | 0.17 | 0.00 | 0.18 | |
| wrapper.violinPlotD | 0.11 | 0.00 | 0.11 | |
| wrapperCalibrationPlot | 0.02 | 0.03 | 0.04 | |
| writeMSnsetToExcel | 0.70 | 0.06 | 0.83 | |
DAPAR.Rcheck/examples_x64/DAPAR-Ex.timings:
| name | user | system | elapsed | |
| BuildAdjacencyMatrix | 0.13 | 0.08 | 0.20 | |
| BuildColumnToProteinDataset | 0.25 | 0.00 | 0.25 | |
| CountPep | 0.12 | 0.03 | 0.16 | |
| GraphPepProt | 0.33 | 0.02 | 0.34 | |
| MeanPeptides | 0.08 | 0.00 | 0.08 | |
| SumPeptides | 0.06 | 0.00 | 0.06 | |
| TopnPeptides | 1.41 | 0.08 | 1.49 | |
| boxPlotD | 0.04 | 0.00 | 0.04 | |
| compareNormalizationD | 0.06 | 0.00 | 0.07 | |
| corrMatrixD | 0.25 | 0.00 | 0.25 | |
| createMSnset | 0.13 | 0.00 | 0.12 | |
| deleteLinesFromIndices | 0.03 | 0.00 | 0.03 | |
| densityPlotD | 0.05 | 0.00 | 0.05 | |
| diffAna | 0.19 | 0.00 | 0.19 | |
| diffAnaComputeFDR | 0.06 | 0.00 | 0.06 | |
| diffAnaGetSignificant | 0.03 | 0.00 | 0.03 | |
| diffAnaLimma | 0.01 | 0.01 | 0.03 | |
| diffAnaSave | 0.03 | 0.00 | 0.03 | |
| diffAnaVolcanoplot | 0.03 | 0.00 | 0.03 | |
| diffAnaWelch | 0.03 | 0.00 | 0.03 | |
| getIndicesConditions | 0.04 | 0.00 | 0.03 | |
| getIndicesOfLinesToRemove | 0.03 | 0.00 | 0.03 | |
| getNumberOf | 0.01 | 0.02 | 0.04 | |
| getNumberOfEmptyLines | 0.03 | 0.00 | 0.03 | |
| getPaletteForLabels | 0.03 | 0.00 | 0.03 | |
| getPaletteForReplicates | 0.03 | 0.00 | 0.03 | |
| getPourcentageOfMV | 0.02 | 0.01 | 0.04 | |
| getProcessingInfo | 0.02 | 0.00 | 0.02 | |
| getProteinsStats | 0.04 | 0.02 | 0.05 | |
| heatmap.DAPAR | 0.28 | 0.00 | 0.28 | |
| heatmapD | 0.28 | 0.03 | 0.31 | |
| limmaCompleteTest | 0.06 | 0.00 | 0.07 | |
| mvFilter | 0.06 | 0.00 | 0.06 | |
| mvFilterFromIndices | 0.03 | 0.00 | 0.03 | |
| mvFilterGetIndices | 0.04 | 0.00 | 0.03 | |
| mvHisto | 0.06 | 0.00 | 0.06 | |
| mvImage | 0.21 | 0.00 | 0.20 | |
| mvImputation | 0.06 | 0.02 | 0.08 | |
| mvPerLinesHisto | 0.05 | 0.00 | 0.05 | |
| mvPerLinesHistoPerCondition | 0.04 | 0.00 | 0.04 | |
| mvTypePlot | 0.11 | 0.00 | 0.11 | |
| normalizeD | 0.03 | 0.01 | 0.05 | |
| pepAgregate | 0.10 | 0.03 | 0.13 | |
| proportionConRev | 0.08 | 0.00 | 0.07 | |
| removeLines | 0.04 | 0.00 | 0.05 | |
| varianceDistD | 0.03 | 0.00 | 0.03 | |
| violinPlotD | 0.11 | 0.00 | 0.11 | |
| wrapper.boxPlotD | 0.01 | 0.02 | 0.03 | |
| wrapper.compareNormalizationD | 0.07 | 0.00 | 0.06 | |
| wrapper.corrMatrixD | 0.23 | 0.00 | 0.23 | |
| wrapper.densityPlotD | 0.05 | 0.01 | 0.07 | |
| wrapper.diffAnaLimma | 0.03 | 0.00 | 0.03 | |
| wrapper.diffAnaWelch | 0.01 | 0.02 | 0.03 | |
| wrapper.heatmapD | 0.29 | 0.00 | 0.28 | |
| wrapper.mvHisto | 0.06 | 0.00 | 0.06 | |
| wrapper.mvImage | 0.56 | 0.00 | 0.57 | |
| wrapper.mvImputation | 0.05 | 0.00 | 0.04 | |
| wrapper.mvPerLinesHisto | 0.04 | 0.00 | 0.05 | |
| wrapper.mvPerLinesHistoPerCondition | 0.04 | 0.00 | 0.03 | |
| wrapper.mvTypePlot | 0.09 | 0.00 | 0.09 | |
| wrapper.normalizeD | 0.05 | 0.00 | 0.05 | |
| wrapper.varianceDistD | 0.17 | 0.00 | 0.17 | |
| wrapper.violinPlotD | 0.11 | 0.01 | 0.13 | |
| wrapperCalibrationPlot | 0.03 | 0.00 | 0.03 | |
| writeMSnsetToExcel | 0.73 | 0.02 | 3.37 | |