BioC 3.4: CHECK report for DRIMSeq on malbec1

Package: DRIMSeq

Version: 1.2.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings DRIMSeq_1.2.0.tar.gz

StartedAt: 2017-04-14 22:10:55 -0400 (Fri, 14 Apr 2017)

EndedAt: 2017-04-14 22:13:30 -0400 (Fri, 14 Apr 2017)

EllapsedTime: 154.6 seconds

RetCode: 0

Status:  OK

CheckDir: DRIMSeq.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings DRIMSeq_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/DRIMSeq.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DRIMSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DRIMSeq’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DRIMSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
data_dmSQTLdata 33.976  0.124  34.156
data_dmDSdata   18.792  0.064  18.915
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘DRIMSeq’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DRIMSeq)

name	user	system	elapsed
data_dmDSdata	18.792	0.064	18.915
data_dmSQTLdata	33.976	0.124	34.156
dmDSdata-class	0.004	0.000	0.006
dmDSdata	0.696	0.004	0.702
dmDSdispersion-class	0.000	0.000	0.001
dmDSfit-class	0	0	0
dmDStest-class	0	0	0
dmDispersion	0.000	0.000	0.001
dmFilter	0.012	0.000	0.011
dmFit	0	0	0
dmSQTLdata-class	0.012	0.000	0.009
dmSQTLdata	1.076	0.000	1.080
dmSQTLtest-class	0	0	0
dmTest	0	0	0
plotData	0.632	0.000	0.629
plotDispersion	0.000	0.000	0.001
plotFit	0.000	0.000	0.001
plotTest	0.000	0.000	0.001