BioC 3.4: INSTALL report for SNPRelate on tokay1

Package: SNPRelate

Version: 1.8.0

Command: rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/SNPRelate_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=SNPRelate.buildbin-libdir --merge-multiarch SNPRelate_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL SNPRelate_1.8.0.zip && rm SNPRelate_1.8.0.tar.gz SNPRelate_1.8.0.zip

StartedAt: 2017-04-14 18:06:32 -0400 (Fri, 14 Apr 2017)

EndedAt: 2017-04-14 18:08:00 -0400 (Fri, 14 Apr 2017)

EllapsedTime: 87.9 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/SNPRelate_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=SNPRelate.buildbin-libdir --merge-multiarch SNPRelate_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL SNPRelate_1.8.0.zip  && rm SNPRelate_1.8.0.tar.gz SNPRelate_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1164k  100 1164k    0     0  10.2M      0 --:--:-- --:--:-- --:--:-- 10.3M

install for i386

* installing *source* package 'SNPRelate' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ThreadPool.cpp -o ThreadPool.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genBeta.cpp -o genBeta.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genFst.cpp -o genFst.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genHWE.cpp -o genHWE.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genKING.cpp -o genKING.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genRec.cpp -o genRec.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genRec.o genSlideWin.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lRblas -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lRlapack -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/SNPRelate.buildbin-libdir/SNPRelate/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'SNPRelate' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ConvToGDS.cpp -o ConvToGDS.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_SNPRelate.c -o R_SNPRelate.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ThreadPool.cpp -o ThreadPool.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genBeta.cpp -o genBeta.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genFst.cpp -o genFst.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genHWE.cpp -o genHWE.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genKING.cpp -o genKING.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genRec.cpp -o genRec.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG -DUSING_R -I.   -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/gdsfmt/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c genSlideWin.cpp -o genSlideWin.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o SNPRelate.dll tmp.def ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genRec.o genSlideWin.o -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lRblas -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lRlapack -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/SNPRelate.buildbin-libdir/SNPRelate/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPRelate' as SNPRelate_1.8.0.zip
* DONE (SNPRelate)
* installing to library 'C:/Users/biocbuild/bbs-3.4-bioc/R/library'
package 'SNPRelate' successfully unpacked and MD5 sums checked