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BioC 3.4: INSTALL report for flowPeaks on moscato1

This page was generated on 2016-09-21 03:44:13 -0700 (Wed, 21 Sep 2016).

Package 425/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.15.0
Yongchao Ge
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowPeaks
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  ERROR  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.15.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/flowPeaks_1.15.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.15.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.15.0.zip && rm flowPeaks_1.15.0.tar.gz flowPeaks_1.15.0.zip
StartedAt: 2016-09-19 20:17:31 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:18:35 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 64.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/flowPeaks_1.15.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.15.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.15.0.zip  && rm flowPeaks_1.15.0.tar.gz flowPeaks_1.15.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  908k  100  908k    0     0  14.4M      0 --:--:-- --:--:-- --:--:-- 44.3M

install for i386

* installing *source* package 'flowPeaks' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/i386/include   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -Lc:/local323/i386/lib -lgsl -lgslcblas -lm -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowPeaks' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -Ic:/local323/x64/include   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -Lc:/local323/x64/lib -lgsl -lgslcblas -lm -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.15.0.zip
* DONE (flowPeaks)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked