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BioC 3.4: BUILD report for paxtoolsr on malbec1

This page was generated on 2017-04-15 16:12:29 -0400 (Sat, 15 Apr 2017).

Package 898/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.8.0
Augustin Luna
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/paxtoolsr
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: paxtoolsr
Version: 1.8.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2017-04-14 19:47:57 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 19:48:21 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 23.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
##############################################################################
##############################################################################


* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: rJava
Loading required package: XML
2017-04-14 19:48:02,989 568  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2017-04-14 19:48:03,084 663  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)

Attaching package: 'plyr'

The following object is masked from 'package:paxtoolsr':

    summarize

Quitting from lines 218-236 (using_paxtoolsr.Rmd) 
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
ERROR: Code: 405 Message: Unknown Error (PC Webservice Error)
Execution halted