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BioC experimental data: CHECK report for colonCA on zin1

This page was generated on 2016-09-17 20:14:51 -0700 (Sat, 17 Sep 2016).

Package 54/304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
colonCA 1.15.0
W Sylvia Merk
Snapshot Date: 2016-09-17 09:20:18 -0700 (Sat, 17 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/colonCA
Last Changed Rev: 3763 / Revision: 3889
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: colonCA
Version: 1.15.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings colonCA_1.15.0.tar.gz
StartedAt: 2016-09-17 11:26:02 -0700 (Sat, 17 Sep 2016)
EndedAt: 2016-09-17 11:26:16 -0700 (Sat, 17 Sep 2016)
EllapsedTime: 13.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: colonCA.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings colonCA_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/colonCA.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘colonCA/DESCRIPTION’ ... OK
* this is package ‘colonCA’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘colonCA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
              old_size new_size compress
  colonCA.rda    788Kb    300Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/colonCA.Rcheck/00check.log’
for details.


colonCA.Rcheck/00install.out:

* installing *source* package ‘colonCA’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (colonCA)

colonCA.Rcheck/colonCA-Ex.timings:

nameusersystemelapsed
colonCA0.0760.0000.075