Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD BIN report for fgsea on oaxaca

This page was generated on 2017-03-04 16:52:45 -0500 (Sat, 04 Mar 2017).

Package 423/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fgsea 1.1.2
Alexey Sergushichev
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fgsea
Last Changed Rev: 124300 / Revision: 127142
Last Changed Date: 2016-11-20 16:32:59 -0500 (Sun, 20 Nov 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: fgsea
Version: 1.1.2
Command: rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fgsea_1.1.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fgsea.buildbin-libdir
StartedAt: 2017-03-04 11:21:32 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:21:57 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 24.9 seconds
RetCode: 0
Status:  OK 
PackageFile: fgsea_1.1.2.tgz
PackageFileSize: 952 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fgsea_1.1.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fgsea.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fgsea.buildbin-libdir fgsea_1.1.2.tar.gz'
>>>>>>> 

* installing *source* package ‘fgsea’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2 -c fastGSEA.cpp -o fastGSEA.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c fgsea_init.c -o fgsea_init.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fgsea.so RcppExports.o fastGSEA.o fgsea_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/fgsea.buildbin-libdir/fgsea/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (fgsea)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fgsea.buildbin-libdir/fgsea/libs//fgsea.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "fgsea.buildbin-libdir/fgsea/libs//fgsea.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "fgsea.buildbin-libdir/fgsea/libs//fgsea.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "fgsea.buildbin-libdir/fgsea/libs//fgsea.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "fgsea.buildbin-libdir/fgsea/libs//fgsea.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "fgsea.buildbin-libdir/fgsea/libs//fgsea.so"