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BUILD report for phenoDist on malbec1

This page was generated on 2018-04-30 09:19:22 -0400 (Mon, 30 Apr 2018).

Package 1085/1559HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoDist 1.27.1
Xian Zhang
Snapshot Date: 2018-04-29 16:46:14 -0400 (Sun, 29 Apr 2018)
URL: https://git.bioconductor.org/packages/phenoDist
Branch: master
Last Commit: 1ee5fb4
Last Changed Date: 2018-03-16 12:49:42 -0400 (Fri, 16 Mar 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: phenoDist
Version: 1.27.1
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
StartedAt: 2018-04-29 19:16:52 -0400 (Sun, 29 Apr 2018)
EndedAt: 2018-04-29 19:17:18 -0400 (Sun, 29 Apr 2018)
EllapsedTime: 26.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
###
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* checking for file ‘phenoDist/DESCRIPTION’ ... OK
* preparing ‘phenoDist’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EBImage

Attaching package: ‘EBImage’

The following object is masked _by_ ‘.GlobalEnv’:

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:EBImage’:

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph//conf/imageconf.txt'
Content type 'text/html; charset=UTF-8' length 10474 bytes (10 KB)
==================================================
downloaded 10 KB

Warning in parseImageConf("conf/imageconf.txt", localPath = localPath, serverURL = serverURL) :
  Assuming empty value for missing field(s): SourceFilenamePatternAssuming empty value for missing field(s): PlateNamesAssuming empty value for missing field(s): ReplicateNamesAssuming empty value for missing field(s): RowNamesAssuming empty value for missing field(s): ColNamesAssuming empty value for missing field(s): ChannelNames

Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
 chunk 3 (label = imageHTSSetup) 
Error in 1:nbPlates : NA/NaN argument
Execution halted