Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:29:33 -0400 (Tue, 09 Apr 2019).
Package 15/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ADaCGH2 2.23.0 Ramon Diaz-Uriarte
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ADaCGH2 |
Version: 2.23.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ADaCGH2 |
StartedAt: 2019-04-08 18:17:04 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 18:17:34 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 30.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ADaCGH2 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘ADaCGH2’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c r_haarseg.c -o r_haarseg.o r_haarseg.c: In function ‘ad_HaarConv’: r_haarseg.c:65:12: warning: unused variable ‘totalNorm’ [-Wunused-variable] double totalNorm; ^˜˜˜˜˜˜˜˜ r_haarseg.c: In function ‘ad_FindLocalPeaks’: r_haarseg.c:152:8: warning: "/*" within comment [-Wcomment] }/* for j */ r_haarseg.c:176:8: warning: "/*" within comment [-Wcomment] }/* for j */ r_haarseg.c:128:9: warning: unused variable ‘j’ [-Wunused-variable] int k,j; ^ r_haarseg.c: In function ‘ad_HaarConv’: r_haarseg.c:97:27: warning: ‘highNonNormed’ may be used uninitialized in this function [-Wmaybe-uninitialized] highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1]; ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ r_haarseg.c:96:26: warning: ‘lowNonNormed’ may be used uninitialized in this function [-Wmaybe-uninitialized] lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1]; ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ r_haarseg.c:99:27: warning: ‘highWeightSum’ may be used uninitialized in this function [-Wmaybe-uninitialized] highWeightSum += weight[highEnd] - weight[k-1]; ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ r_haarseg.c:98:26: warning: ‘lowWeightSum’ may be used uninitialized in this function [-Wmaybe-uninitialized] lowWeightSum += weight[k-1] - weight[lowEnd]; ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o ADaCGH2.so init.o r_haarseg.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-ADaCGH2/00new/ADaCGH2/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘ADaCGH2.Rnw’ using ‘latin1’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ADaCGH2)