Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:20:27 -0400 (Tue, 09 Apr 2019).
Package 718/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GSReg 1.17.0 Bahman Afsari
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: GSReg |
Version: 1.17.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GSReg_1.17.0.tar.gz && rm -rf GSReg.buildbin-libdir && mkdir GSReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSReg.buildbin-libdir GSReg_1.17.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GSReg_1.17.0.zip && rm GSReg_1.17.0.tar.gz GSReg_1.17.0.zip |
StartedAt: 2019-04-08 20:26:28 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 20:27:23 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 55.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GSReg_1.17.0.tar.gz && rm -rf GSReg.buildbin-libdir && mkdir GSReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSReg.buildbin-libdir GSReg_1.17.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GSReg_1.17.0.zip && rm GSReg_1.17.0.tar.gz GSReg_1.17.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 201k 100 201k 0 0 3638k 0 --:--:-- --:--:-- --:--:-- 4116k install for i386 * installing *source* package 'GSReg' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistance.cc -o kendallTauDistance.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistanceFromTemp.cc -o kendallTauDistanceFromTemp.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistanceRestricted.cc -o kendallTauDistanceRestricted.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c nij.cc -o nij.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c vect2compC.cc -o vect2compC.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GSReg.dll tmp.def init.o kendallTauDistance.o kendallTauDistanceFromTemp.o kendallTauDistanceRestricted.o nij.o vect2compC.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GSReg.buildbin-libdir/00LOCK-GSReg/00new/GSReg/libs/i386 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GSReg' finding HTML links ... done GSReg-package html GSReg_GeneSets_DIRAC html GSReg_GeneSets_VReg. html GSReg_Kendall html GSReg_OverlapJunction html GSReg_SEVA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GSReg' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistance.cc -o kendallTauDistance.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistanceFromTemp.cc -o kendallTauDistanceFromTemp.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kendallTauDistanceRestricted.cc -o kendallTauDistanceRestricted.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c nij.cc -o nij.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c vect2compC.cc -o vect2compC.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GSReg.dll tmp.def init.o kendallTauDistance.o kendallTauDistanceFromTemp.o kendallTauDistanceRestricted.o nij.o vect2compC.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GSReg.buildbin-libdir/GSReg/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GSReg' as GSReg_1.17.0.zip * DONE (GSReg) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'GSReg' successfully unpacked and MD5 sums checked