Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:44:53 -0400 (Tue, 09 Apr 2019).
Package 1223/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PrInCE 0.99.13 Michael Skinnider
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: PrInCE |
Version: 0.99.13 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings PrInCE_0.99.13.tar.gz |
StartedAt: 2019-04-09 05:03:43 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 05:09:15 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 332.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PrInCE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings PrInCE_0.99.13.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/PrInCE.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'PrInCE/DESCRIPTION' ... OK * this is package 'PrInCE' version '0.99.13' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PrInCE' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed calculate_precision 7.87 0.33 8.24 predict_ensemble 6.35 0.25 6.61 predict_interactions 6.35 0.23 6.57 PrInCE 6.04 0.26 6.32 threshold_precision 5.65 0.13 5.79 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed calculate_precision 5.81 0.25 6.06 predict_interactions 5.42 0.20 5.62 predict_ensemble 5.03 0.25 5.29 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PrInCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PrInCE_0.99.13.tar.gz && rm -rf PrInCE.buildbin-libdir && mkdir PrInCE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrInCE.buildbin-libdir PrInCE_0.99.13.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PrInCE_0.99.13.zip && rm PrInCE_0.99.13.tar.gz PrInCE_0.99.13.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1601k 100 1601k 0 0 20.8M 0 --:--:-- --:--:-- --:--:-- 22.9M install for i386 * installing *source* package 'PrInCE' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PrInCE Registered S3 methods overwritten by 'ggplot2': method from [.quosures rlang c.quosures rlang print.quosures rlang Registered S3 method overwritten by 'xts': method from as.zoo.xts zoo Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo Registered S3 methods overwritten by 'forecast': method from fitted.fracdiff fracdiff residuals.fracdiff fracdiff *** installing help indices converting help for package 'PrInCE' finding HTML links ... done PrInCE html finding level-2 HTML links ... done adjacency_matrix_from_data_frame html adjacency_matrix_from_list html aic html build_gaussians html calculate_features html calculate_precision html check_gaussians html choose_gaussians html clean_profile html clean_profiles html co_apex html concatenate_features html detect_complexes html filter_profiles html fit_curve html fit_gaussians html gold_standard html impute_neighbors html is_unweighted html is_weighted html kristensen html kristensen_gaussians html make_feature_from_data_frame html make_feature_from_expression html make_initial_conditions html make_labels html match_matrix_dimensions html predict_ensemble html predict_interactions html replace_missing_data html scott html scott_gaussians html threshold_precision html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PrInCE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PrInCE' as PrInCE_0.99.13.zip * DONE (PrInCE) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'PrInCE' successfully unpacked and MD5 sums checked
PrInCE.Rcheck/examples_i386/PrInCE-Ex.timings
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PrInCE.Rcheck/examples_x64/PrInCE-Ex.timings
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