Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:47:59 -0400 (Tue, 09 Apr 2019).
Package 221/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cellbaseR 1.7.2 Mohammed OE Abdallah
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: cellbaseR |
Version: 1.7.2 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:cellbaseR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings cellbaseR_1.7.2.tar.gz |
StartedAt: 2019-04-08 23:15:34 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 23:17:47 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 132.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cellbaseR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:cellbaseR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings cellbaseR_1.7.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/cellbaseR.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cellbaseR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cellbaseR’ version ‘1.7.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cellbaseR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed AnnotateVcf-CellBaseR-method 8.487 1.635 10.896 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cellbaseR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL cellbaseR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘cellbaseR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cellbaseR)
cellbaseR.Rcheck/cellbaseR-Ex.timings
name | user | system | elapsed | |
AnnotateVcf-CellBaseR-method | 8.487 | 1.635 | 10.896 | |
CellBaseParam | 0.003 | 0.000 | 0.003 | |
CellBaseR | 0.042 | 0.004 | 0.334 | |
createGeneModel | 0.304 | 0.020 | 0.921 | |
getCaddScores | 0.054 | 0.004 | 0.529 | |
getCellBase-CellBaseR-method | 0.083 | 0.008 | 0.571 | |
getCellBaseResourceHelp | 0.420 | 0.020 | 1.014 | |
getChromosomeInfo-CellBaseR-method | 0.052 | 0.000 | 0.522 | |
getClinical-CellBaseR-method | 0.839 | 0.004 | 1.625 | |
getClinicalByRegion | 1.993 | 0.040 | 3.229 | |
getConservationByRegion | 0.091 | 0.000 | 0.797 | |
getGene-CellBaseR-method | 0.143 | 0.000 | 0.830 | |
getGeneInfo | 0.059 | 0.000 | 0.541 | |
getMeta-CellBaseR-method | 0.071 | 0.000 | 0.543 | |
getProtein-CellBaseR-method | 0.149 | 0.004 | 0.726 | |
getProteinInfo | 0.149 | 0.000 | 0.722 | |
getRegion-CellBaseR-method | 0.103 | 0.008 | 0.802 | |
getRegulatoryByRegion | 0.174 | 0.000 | 1.005 | |
getSnp-CellBaseR-method | 0.079 | 0.000 | 0.567 | |
getSnpByGene | 0.098 | 0.000 | 0.593 | |
getTf-CellBaseR-method | 0.074 | 0.000 | 2.787 | |
getTfbsByRegion | 0.087 | 0.000 | 0.597 | |
getTranscript-CellBaseR-method | 0.065 | 0.000 | 0.548 | |
getTranscriptByGene | 0.065 | 0.000 | 0.548 | |
getVariant-CellBaseR-method | 0.156 | 0.000 | 0.791 | |
getVariantAnnotation | 0.15 | 0.00 | 0.77 | |
getXref-CellBaseR-method | 0.062 | 0.000 | 0.537 | |