Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:31:30 -0400 (Tue, 09 Apr 2019).
Package 314/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
coexnet 1.5.1 Juan David Henao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: coexnet |
Version: 1.5.1 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:coexnet.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings coexnet_1.5.1.tar.gz |
StartedAt: 2019-04-09 01:55:23 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:59:59 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 276.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: coexnet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:coexnet.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings coexnet_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/coexnet.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'coexnet/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'coexnet' version '1.5.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'coexnet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed findThreshold 13.52 1.08 14.59 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed findThreshold 16.86 0.45 17.31 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
coexnet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/coexnet_1.5.1.tar.gz && rm -rf coexnet.buildbin-libdir && mkdir coexnet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=coexnet.buildbin-libdir coexnet_1.5.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL coexnet_1.5.1.zip && rm coexnet_1.5.1.tar.gz coexnet_1.5.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1744k 100 1744k 0 0 22.6M 0 --:--:-- --:--:-- --:--:-- 24.6M install for i386 * installing *source* package 'coexnet' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'coexnet' finding HTML links ... done CCP html affy html cofVar html createNet html difExprs html exprMat html findThreshold html geneSymbol html getAffy html getInfo html info html net1 html net2 html ppiNet html sharedComponents html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'coexnet' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'coexnet' as coexnet_1.5.1.zip * DONE (coexnet) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'coexnet' successfully unpacked and MD5 sums checked
coexnet.Rcheck/tests_i386/runTests.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("coexnet") Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Achieved FDR: 0.0979166666666667Achieved FDR: 0.0463636363636364Warning: 4 parsing failures. row col expected actual file 118 -- 16 columns 15 columns literal data 119 -- 16 columns 13 columns literal data 121 -- 16 columns 15 columns literal data 122 -- 16 columns 15 columns literal data RUNIT TEST PROTOCOL -- Tue Apr 09 01:59:41 2019 *********************************************** Number of test functions: 10 Number of errors: 0 Number of failures: 0 1 Test Suite : coexnet RUnit Tests - 10 test functions, 0 errors, 0 failures Number of test functions: 10 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 12.71 0.67 13.42 |
coexnet.Rcheck/tests_x64/runTests.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("coexnet") Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Achieved FDR: 0.0979166666666667Achieved FDR: 0.0463636363636364Warning: 4 parsing failures. row col expected actual file 118 -- 16 columns 15 columns literal data 119 -- 16 columns 13 columns literal data 121 -- 16 columns 15 columns literal data 122 -- 16 columns 15 columns literal data RUNIT TEST PROTOCOL -- Tue Apr 09 01:59:54 2019 *********************************************** Number of test functions: 10 Number of errors: 0 Number of failures: 0 1 Test Suite : coexnet RUnit Tests - 10 test functions, 0 errors, 0 failures Number of test functions: 10 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 12.20 0.48 12.67 |
coexnet.Rcheck/examples_i386/coexnet-Ex.timings
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coexnet.Rcheck/examples_x64/coexnet-Ex.timings
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