Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:16:25 -0400 (Tue, 09 Apr 2019).
Package 361/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
crossmeta 1.9.0 Alex Pickering
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: crossmeta |
Version: 1.9.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:crossmeta.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings crossmeta_1.9.0.tar.gz |
StartedAt: 2019-04-09 01:05:41 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:07:51 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 129.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: crossmeta.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:crossmeta.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings crossmeta_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/crossmeta.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘crossmeta/DESCRIPTION’ ... OK * this is package ‘crossmeta’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘crossmeta’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Missing or unexported objects: ‘crossmeta::gs.names’ ‘crossmeta::gslist’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE explore_paths : server: no visible binding for global variable ‘gslist’ explore_paths : server: no visible binding for global variable ‘gs.names’ Undefined global functions or variables: gs.names gslist * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data with usage in documentation object 'gs.names' but not in code: gs.names Data with usage in documentation object 'gslist' but not in code: gslist * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed diff_path 8.957 0.394 9.363 symbol_annot 6.044 0.400 6.445 es_meta 4.520 0.547 5.067 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/crossmeta.Rcheck/00check.log’ for details.
crossmeta.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL crossmeta ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘crossmeta’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crossmeta)
crossmeta.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(crossmeta) > > test_check("crossmeta") AnnotatingAnnotatingAnnotatingGSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 GSE1_FOO-VEH (# p < 0.05): 3 ══ testthat results ═══════════════════════════════════════════════════════════ OK: 14 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 15.103 3.430 13.435
crossmeta.Rcheck/crossmeta-Ex.timings
name | user | system | elapsed | |
add_sources | 0.267 | 0.013 | 0.281 | |
contribute | 0.886 | 0.051 | 0.941 | |
diff_expr | 0.457 | 0.048 | 0.506 | |
diff_path | 8.957 | 0.394 | 9.363 | |
es_meta | 4.520 | 0.547 | 5.067 | |
explore_paths | 3.315 | 0.424 | 3.739 | |
get_raw | 0.322 | 0.054 | 1.141 | |
load_diff | 0.252 | 0.008 | 0.260 | |
load_path | 0.014 | 0.001 | 0.015 | |
load_raw | 0.361 | 0.023 | 0.384 | |
open_raw_illum | 0.010 | 0.002 | 0.011 | |
path_meta | 0.009 | 0.001 | 0.010 | |
setup_prev | 1.346 | 0.062 | 1.408 | |
symbol_annot | 6.044 | 0.400 | 6.445 | |