Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:30:30 -0400 (Tue, 09 Apr 2019).
Package 1022/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
motifcounter 1.7.0 Wolfgang Kopp
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: motifcounter |
Version: 1.7.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:motifcounter.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings motifcounter_1.7.0.tar.gz |
StartedAt: 2019-04-09 04:23:06 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 04:52:25 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 1759.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: motifcounter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:motifcounter.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings motifcounter_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/motifcounter.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'motifcounter/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'motifcounter' version '1.7.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .zenodo.json These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'motifcounter' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/motifcounter/libs/i386/motifcounter.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/motifcounter/libs/x64/motifcounter.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed simulateClumpSizeDist 11.20 0.50 11.70 motifEnrichment 4.31 0.72 5.03 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed simulateClumpSizeDist 12.47 0.56 13.04 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/motifcounter.Rcheck/00check.log' for details.
motifcounter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/motifcounter_1.7.0.tar.gz && rm -rf motifcounter.buildbin-libdir && mkdir motifcounter.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifcounter.buildbin-libdir motifcounter_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL motifcounter_1.7.0.zip && rm motifcounter_1.7.0.tar.gz motifcounter_1.7.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 383k 100 383k 0 0 3731k 0 --:--:-- --:--:-- --:--:-- 3998k install for i386 * installing *source* package 'motifcounter' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rbackground.c -o Rbackground.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rcombinatorial.c -o Rcombinatorial.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rcompoundpoisson.c -o Rcompoundpoisson.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rminmaxscore.c -o Rminmaxscore.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Roption.c -o Roption.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Roverlap.c -o Roverlap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rscore1d.c -o Rscore1d.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rsequence.c -o Rsequence.o Rsequence.c: In function 'RscoreHistogram': Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable] int mins, maxs, noscores; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c Rsimulate.c -o Rsimulate.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c background.c -o background.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c combinatorial.c -o combinatorial.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c compoundpoisson.c -o compoundpoisson.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c markovchain.c -o markovchain.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c markovchain_single.c -o markovchain_single.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c matrix.c -o matrix.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c mdist_register.c -o mdist_register.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c minmaxscore.c -o minmaxscore.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c overlap.c -o overlap.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c score1d.c -o score1d.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c score2d.c -o score2d.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c scorefunctions.c -o scorefunctions.o scorefunctions.c: In function 'getPositionWeights': scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable] int j, i, index, cindex, ds; ^ scorefunctions.c: In function 'hitSequence': scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ scorefunctions.c: In function 'scoreSequence': scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c sequence.c -o sequence.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O3 -Wall -std=gnu99 -mtune=generic -c simulate.c -o simulate.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o motifcounter.dll tmp.def Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/motifcounter.buildbin-libdir/00LOCK-motifcounter/00new/motifcounter/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'motifcounter' finding HTML links ... done Background-class html Overlap-class html clumpSizeDist html combinatorialDist html compoundPoissonDist html computeClumpStartProb html generateDNAString html generateDNAStringSet html getAlpha html getBeta html getBeta3p html getBeta5p html getCounts html getGamma html getOrder html getSinglestranded html getStation html getTrans html hitStrand html lenSequences html markovModel html motifAndBackgroundValid html motifEnrichment html motifHitProfile html motifHits html motifValid html motifcounter-package html motifcounterOptions html normalizeMotif html numMotifHits html probOverlapHit html readBackground html revcompMotif html scoreDist html scoreDistBf html scoreDistEmpirical html scoreHistogram html scoreHistogramSingleSeq html scoreProfile html scoreSequence html scoreStrand html scoreThreshold html sigLevel html simulateClumpSizeDist html simulateNumHitsDist html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'motifcounter' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rbackground.c -o Rbackground.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rcombinatorial.c -o Rcombinatorial.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rcompoundpoisson.c -o Rcompoundpoisson.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rminmaxscore.c -o Rminmaxscore.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Roption.c -o Roption.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Roverlap.c -o Roverlap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rscore1d.c -o Rscore1d.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rsequence.c -o Rsequence.o Rsequence.c: In function 'RscoreHistogram': Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable] int mins, maxs, noscores; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c Rsimulate.c -o Rsimulate.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c background.c -o background.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c combinatorial.c -o combinatorial.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c compoundpoisson.c -o compoundpoisson.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c markovchain.c -o markovchain.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c markovchain_single.c -o markovchain_single.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c matrix.c -o matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c mdist_register.c -o mdist_register.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c minmaxscore.c -o minmaxscore.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c overlap.c -o overlap.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c score1d.c -o score1d.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c score2d.c -o score2d.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c scorefunctions.c -o scorefunctions.o scorefunctions.c: In function 'getPositionWeights': scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable] int j, i, index, cindex, ds; ^ scorefunctions.c: In function 'hitSequence': scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ scorefunctions.c: In function 'scoreSequence': scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c sequence.c -o sequence.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -DIN_R -O2 -Wall -std=gnu99 -mtune=generic -c simulate.c -o simulate.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o motifcounter.dll tmp.def Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/motifcounter.buildbin-libdir/motifcounter/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'motifcounter' as motifcounter_1.7.0.zip * DONE (motifcounter) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'motifcounter' successfully unpacked and MD5 sums checked
motifcounter.Rcheck/tests_i386/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(motifcounter) > > test_check("motifcounter") == testthat results =========================================================== OK: 841 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 534.29 361.32 896.43 |
motifcounter.Rcheck/tests_x64/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(motifcounter) > > test_check("motifcounter") == testthat results =========================================================== OK: 841 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 348.10 332.54 695.96 |
motifcounter.Rcheck/examples_i386/motifcounter-Ex.timings
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motifcounter.Rcheck/examples_x64/motifcounter-Ex.timings
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