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BUILD BIN report for spliceSites on merida2

This page was generated on 2019-04-08 12:24:57 -0400 (Mon, 08 Apr 2019).

Package 1541/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spliceSites 1.31.0
Wolfgang Kaisers
Snapshot Date: 2019-04-07 17:01:41 -0400 (Sun, 07 Apr 2019)
URL: https://git.bioconductor.org/packages/spliceSites
Branch: master
Last Commit: 0035a63
Last Changed Date: 2018-10-30 11:54:32 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  ERROR  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]

Summary

Package: spliceSites
Version: 1.31.0
Command: rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceSites_1.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceSites.buildbin-libdir
StartedAt: 2019-04-08 06:42:25 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 06:43:48 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 83.0 seconds
RetCode: 0
Status:  OK 
PackageFile: spliceSites_1.31.0.tgz
PackageFileSize: 3.566 MiB

Command output

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###
### Running command:
###
###   rm -rf spliceSites.buildbin-libdir && mkdir spliceSites.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceSites_1.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceSites.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=spliceSites.buildbin-libdir spliceSites_1.31.0.tar.gz'
>>>>>>> 

* installing *source* package ‘spliceSites’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c spliceSites.c -o spliceSites.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spliceSites.so spliceSites.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/spliceSites.buildbin-libdir/spliceSites/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spliceSites)


>>>>>>> 
>>>>>>> FIXING LINKS FOR spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "spliceSites.buildbin-libdir/spliceSites/libs//spliceSites.so"