Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:24:16 -0400 (Tue, 09 Apr 2019).
Package 24/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
AffyCompatible 1.43.0 Martin Morgan
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: AffyCompatible |
Version: 1.43.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:AffyCompatible.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings AffyCompatible_1.43.0.tar.gz |
StartedAt: 2019-04-08 23:09:00 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 23:11:04 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 123.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AffyCompatible.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:AffyCompatible.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings AffyCompatible_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/AffyCompatible.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘AffyCompatible/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘AffyCompatible’ version ‘1.43.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘AffyCompatible’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed NetAffxResource-class 7.293 0.292 9.484 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
AffyCompatible.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL AffyCompatible ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘AffyCompatible’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (AffyCompatible)
AffyCompatible.Rcheck/AffyCompatible-Ex.timings
name | user | system | elapsed | |
AffyCompatible-class | 0.002 | 0.000 | 0.002 | |
NetAffxResource-class | 7.293 | 0.292 | 9.484 | |
readArr | 0.271 | 0.006 | 0.286 | |
readMage | 1.134 | 0.019 | 1.164 | |
readNetAffx | 0 | 0 | 0 | |
readXml | 0.049 | 0.001 | 0.050 | |
xclass | 0.088 | 0.003 | 0.093 | |
zzz-ARRCompatibility-class | 0.000 | 0.000 | 0.001 | |
zzz-DTTCompatibility-class | 0.013 | 0.009 | 0.023 | |
zzz-NetAffxCompatibility-class | 0.001 | 0.001 | 0.001 | |